Back to structures

OQ851295.1__WJZ69977.1__PVP_XSN000029__00029

Bact-Vir

OQ851295.1__WJZ69977.1__PVP_XSN000029__00029

Identity

Accession:
OQ851295 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-168
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.80 45.0 5.65e-01 93.4% 89.4%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.66 39.0 4.64e-01 93.4% 89.6%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.62 47.0 5.09e-01 93.4% 95.2%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 45.0 5.07e-01 89.4% 98.2%
7pjcA02 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 45.0 4.88e-01 93.4% 93.8%
2c8mB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 53.0 4.52e-01 100.0% 88.6%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.57 26.0 3.62e-01 80.8% 93.9%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.56 32.0 3.86e-01 72.2% 84.7%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 40.0 4.09e-01 74.8% 75.5%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 4.61e-01 92.1% 94.0%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.55 40.0 3.71e-01 76.2% 60.3%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 48.0 4.49e-01 95.4% 76.6%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 43.0 3.64e-01 85.4% 67.3%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 34.0 3.82e-01 71.5% 82.9%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 40.0 3.24e-01 80.1% 85.5%
2ctlA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 26.0 3.13e-01 94.0% 74.2%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 35.0 3.85e-01 75.5% 88.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3462595 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.81 43.0 5.50e-01 92.1% 86.7%
3332764 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.80 43.0 5.74e-01 92.7% 95.3%
3716480 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.75 49.0 4.81e-01 94.0% 61.9%
3782093 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.75 37.0 4.91e-01 84.8% 85.9%
3286115 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.72 49.0 5.55e-01 93.4% 91.3%
3703071 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 31.0 4.04e-01 87.4% 83.5%
3462190 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.61 36.0 2.72e-01 74.2% 25.0%
3707715 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.61 49.0 4.79e-01 93.4% 79.4%
3783714 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.60 31.0 4.20e-01 84.8% 100.0%
4951804 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 37.0 3.87e-01 76.8% 69.3%
4955095 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 28.0 3.66e-01 92.1% 84.7%
3603956 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.55 49.0 4.21e-01 95.4% 61.3%
3275961 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 47.0 4.27e-01 92.1% 84.5%
5024072 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 29.0 3.40e-01 71.5% 78.1%
3593728 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 36.0 3.64e-01 74.8% 72.7%
3213706 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 35.0 3.08e-01 74.2% 48.6%
3246370 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 36.0 2.83e-01 74.2% 39.4%
D2 high residues 184-266
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 50.0 5.50e-01 72.3% 81.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 50.0 5.45e-01 73.5% 80.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.81e-01 84.3% 100.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.95e-01 78.3% 96.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 5.25e-01 75.9% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 4.99e-01 77.1% 78.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.36e-01 77.1% 96.6%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.77e-01 71.1% 90.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.91e-01 71.1% 90.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 4.25e-01 71.1% 68.2%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.34e-01 91.6% 55.3%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.71e-01 71.1% 96.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.63e-01 73.5% 97.0%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 36.0 4.21e-01 89.2% 87.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.49e-01 79.5% 89.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.22e-01 92.8% 73.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.67e-01 98.8% 87.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 38.0 4.41e-01 86.7% 98.2%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.58 52.0 4.08e-01 100.0% 66.1%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 36.0 3.87e-01 81.9% 72.6%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.58 45.0 4.08e-01 83.1% 89.9%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.23e-01 72.3% 93.9%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.29e-01 74.7% 87.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 44.0 3.03e-01 94.0% 94.6%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 34.0 2.80e-01 71.1% 52.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.41e-01 72.3% 93.8%
4024915 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.80 56.0 6.33e-01 72.3% 93.8%
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.80 46.0 5.36e-01 78.3% 80.0%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 46.0 5.54e-01 78.3% 92.7%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.76 49.0 5.64e-01 89.2% 91.7%
3404643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.66e-01 72.3% 94.3%
3571487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.50e-01 72.3% 90.4%
4929472 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.86e-01 71.1% 91.3%
4927654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.34e-01 73.5% 95.4%
5025364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 46.0 4.86e-01 71.1% 86.7%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.67e-01 72.3% 70.6%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.82e-01 98.8% 63.3%
4514731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.32e-01 71.1% 67.1%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.63 43.0 4.71e-01 71.1% 92.3%
3969500 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.40e-01 78.3% 93.7%
4646501 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.21e-01 100.0% 51.0%
3585619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 3.23e-01 72.3% 93.3%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.53 41.0 4.16e-01 85.5% 89.4%
4518211 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 42.0 3.27e-01 88.0% 61.1%
D3 medium residues 279-362
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02151.26 best UVR 26.5 5.90e-06 30.9% 63.9%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.83 38.0 5.26e-01 84.5% 84.8%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.80 37.0 2.99e-01 84.5% 27.1%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 38.0 4.73e-01 81.0% 79.2%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.74 38.0 4.88e-01 77.4% 84.6%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.72 38.0 4.00e-01 77.4% 56.6%
2xtcA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.65 37.0 3.90e-01 73.8% 62.2%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 39.0 4.11e-01 100.0% 68.0%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.56 41.0 4.07e-01 76.2% 78.7%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.55 39.0 4.07e-01 100.0% 79.2%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 42.0 4.69e-01 100.0% 100.0%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.54 32.0 3.73e-01 81.0% 86.0%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.54 44.0 3.83e-01 84.5% 70.6%
1ug7A00 1.20.120.360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain 0.53 49.0 4.24e-01 100.0% 81.2%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.53 37.0 3.75e-01 98.8% 70.9%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 33.0 3.12e-01 76.2% 51.5%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 39.0 3.65e-01 79.8% 74.5%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 3.57e-01 100.0% 52.4%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 39.0 3.67e-01 81.0% 74.8%
3ziuA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 42.0 3.00e-01 100.0% 31.9%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 3.43e-01 84.5% 96.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3262528 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.71 38.0 3.89e-01 89.3% 56.2%
3609512 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 3.98e-01 84.5% 80.0%
651 4.21.1.1 beta barrels › SH3 › ImpE-like › ImpE-like › ImpE 0.61 54.0 4.27e-01 100.0% 82.5%
3720034 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 46.0 3.92e-01 84.5% 95.9%
3702068 109.46.1.0 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.59 45.0 3.52e-01 78.6% 86.9%
4048397 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.57 44.0 4.12e-01 79.8% 82.0%
5017303 223.8.1.0 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.57 45.0 4.41e-01 83.3% 86.7%
3856750 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 46.0 3.19e-01 84.5% 88.2%
3966441 4.21.1.0 beta barrels › SH3 › ImpE-like › ImpE-like 0.56 49.0 3.91e-01 98.8% 81.1%
4943974 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 4.00e-01 83.3% 90.0%
1405082 4.21.1.1 beta barrels › SH3 › ImpE-like › ImpE-like › ImpE 0.56 49.0 3.91e-01 98.8% 83.1%
4010374 223.1.1.156 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.53 41.0 3.67e-01 84.5% 84.2%
3796623 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 2.73e-01 83.3% 95.2%
3861849 601.1.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.52 45.0 2.95e-01 91.7% 80.9%
3948638 223.8.1.4 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.51 41.0 3.32e-01 86.9% 65.0%
4944565 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.24e-01 83.3% 89.2%