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OQ858564.1__WKC56035.1__X__00028

Bact-Vir

OQ858564.1__WKC56035.1__X__00028

Identity

Accession:
OQ858564 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_CAU_VPP01

TaxID: 3061015

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-83
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 52.0 4.03e-01 78.0% 46.3%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 46.0 3.90e-01 72.9% 44.7%
1x4uA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 47.0 4.51e-01 76.3% 87.0%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 47.0 4.32e-01 76.3% 64.9%
1ul4A01 4.10.1100.10 Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain 0.64 42.0 4.14e-01 72.9% 61.5%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.63 47.0 4.23e-01 78.0% 94.9%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 38.0 4.22e-01 71.2% 83.7%
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 44.0 2.77e-01 79.7% 23.9%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 43.0 2.85e-01 78.0% 39.3%
3fnrA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 45.0 2.89e-01 83.1% 25.7%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 35.0 3.92e-01 79.7% 89.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 3.21e-01 93.2% 40.6%
1nktA02 3.90.1440.10 Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain 0.56 37.0 3.00e-01 74.6% 33.6%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.56 40.0 3.77e-01 79.7% 70.7%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.56 39.0 3.41e-01 78.0% 59.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.71e-01 71.2% 89.2%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 37.0 3.83e-01 84.7% 74.5%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.55 39.0 3.54e-01 74.6% 66.7%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.98e-01 78.0% 79.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.71e-01 74.6% 79.7%
2eodA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.56e-01 72.9% 69.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 35.0 3.72e-01 72.9% 96.2%
5jrjA02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.52 37.0 3.76e-01 78.0% 86.4%
2dnlA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 31.0 2.83e-01 71.2% 40.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 34.0 3.03e-01 74.6% 64.6%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 32.0 3.06e-01 71.2% 54.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011546 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 65.0 4.73e-01 84.7% 47.3%
3393209 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 45.0 5.08e-01 72.9% 77.8%
3496998 260.1.1.0 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat 0.75 52.0 3.43e-01 72.9% 22.5%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 50.0 5.43e-01 76.3% 84.0%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.71 51.0 4.30e-01 86.4% 46.3%
3595118 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.69 52.0 3.14e-01 79.7% 13.1%
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 49.0 4.76e-01 74.6% 70.8%
3235494 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.68 47.0 4.88e-01 72.9% 85.5%
3822811 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 48.0 4.20e-01 78.0% 50.0%
3606619 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.66 49.0 3.01e-01 79.7% 12.9%
3679252 376.1.3.24 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD 0.66 47.0 4.74e-01 74.6% 76.7%
3769720 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.66 48.0 4.95e-01 76.3% 89.1%
3924159 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 47.0 4.04e-01 74.6% 96.7%
3828987 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 48.0 4.04e-01 94.9% 47.4%
3176507 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.66 47.0 4.20e-01 74.6% 87.5%
3438007 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 45.0 3.82e-01 72.9% 44.2%
8216 377.6.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › SBT domain › SBT domain › SBP 0.65 45.0 3.99e-01 83.1% 50.0%
3705738 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 46.0 4.62e-01 74.6% 76.7%
3614159 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 38.0 2.32e-01 72.9% 9.6%
3613326 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 44.0 4.70e-01 72.9% 94.0%
2488795 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.60 45.0 2.96e-01 83.1% 29.0%
None — 0.59 43.0 2.69e-01 78.0% 38.8%
5001837 2005.1.1.12 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e 0.59 42.0 2.81e-01 78.0% 47.0%
None — 0.59 43.0 2.67e-01 79.7% 34.5%
None — 0.58 42.0 2.88e-01 79.7% 52.5%
4365811 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.58 42.0 2.48e-01 79.7% 14.7%
4467915 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.58 42.0 2.82e-01 79.7% 31.2%
3483955 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.58 36.0 3.30e-01 81.4% 43.5%
4593208 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.58 42.0 2.70e-01 79.7% 25.3%
4020312 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.57 42.0 2.77e-01 79.7% 33.7%
None — 0.57 46.0 2.81e-01 91.5% 17.7%
3722694 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 41.0 3.66e-01 98.3% 50.5%
3889228 386.1.1.66 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.57 40.0 3.70e-01 88.1% 57.7%
None — 0.56 41.0 2.78e-01 79.7% 33.2%
3262364 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.56 40.0 3.31e-01 76.3% 67.3%
4650117 502.1.1.1 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.56 40.0 3.75e-01 79.7% 70.0%
3490047 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 34.0 3.48e-01 86.4% 60.0%
None — 0.56 40.0 2.39e-01 79.7% 15.3%
None — 0.55 41.0 2.43e-01 83.1% 13.5%
4430167 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.55 44.0 2.97e-01 89.8% 30.4%
4477974 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.55 40.0 2.63e-01 79.7% 30.5%
4325434 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.54 43.0 2.52e-01 89.8% 13.6%
None — 0.54 40.0 2.66e-01 83.1% 30.5%
4492394 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.54 44.0 2.86e-01 91.5% 27.9%
4429378 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.53 43.0 2.76e-01 89.8% 42.7%
4421947 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.53 42.0 2.48e-01 89.8% 13.2%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 32.0 3.48e-01 71.2% 71.4%
4156893 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.53 43.0 2.76e-01 89.8% 25.9%
3730592 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.53 42.0 2.71e-01 89.8% 25.9%
4002388 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 3.74e-01 94.9% 80.0%
None — 0.53 42.0 2.45e-01 89.8% 13.5%
4342055 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 40.0 2.39e-01 89.8% 13.4%
None — 0.52 41.0 2.38e-01 89.8% 13.8%
None — 0.52 40.0 2.38e-01 89.8% 13.8%
4967026 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 42.0 4.14e-01 98.3% 87.7%
4487338 2004.1.1.1007 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27141 0.51 42.0 2.94e-01 100.0% 96.2%
3362575 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 43.0 2.51e-01 96.6% 16.1%
4307213 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 40.0 2.38e-01 93.2% 13.1%
4389484 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 40.0 2.63e-01 89.8% 28.4%
None — 0.51 41.0 2.49e-01 96.6% 15.4%
None — 0.51 41.0 2.52e-01 96.6% 20.0%
3881538 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 39.0 2.76e-01 89.8% 34.1%
4232630 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.50 40.0 2.65e-01 91.5% 34.1%
4112234 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 41.0 2.60e-01 96.6% 24.5%
4383749 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.50 41.0 2.69e-01 96.6% 34.8%
None — 0.50 41.0 2.44e-01 96.6% 16.6%