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OQ860985.1__WJJ60603.1__X__00053

Bact-Vir

OQ860985.1__WJJ60603.1__X__00053

Identity

Accession:
OQ860985 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Kayfunavirus› Salmonella_phage_ST10

TaxID: 3027685

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-69
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.81 73.0 4.23e-01 98.5% 13.1%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.81 73.0 4.25e-01 100.0% 13.8%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 46.0 4.04e-01 79.1% 55.0%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 56.0 3.84e-01 100.0% 78.6%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 54.0 3.54e-01 100.0% 77.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.59 41.0 2.51e-01 73.1% 49.3%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.09e-01 82.1% 82.2%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 48.0 3.16e-01 94.0% 57.8%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.11e-01 95.5% 48.4%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.58 48.0 3.14e-01 94.0% 48.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.44e-01 82.1% 45.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.69e-01 82.1% 88.3%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 48.0 3.03e-01 95.5% 53.1%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 48.0 3.04e-01 97.0% 59.8%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 43.0 3.37e-01 86.6% 72.8%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 2.88e-01 80.6% 64.6%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.05e-01 94.0% 76.4%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 39.0 2.69e-01 77.6% 28.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.23e-01 100.0% 49.1%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 3.05e-01 74.6% 95.1%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 44.0 2.92e-01 100.0% 90.0%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 38.0 2.67e-01 77.6% 28.1%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.80e-01 97.0% 53.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 37.0 2.74e-01 74.6% 32.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 44.0 3.53e-01 95.5% 95.6%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 2.98e-01 79.1% 43.3%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 36.0 2.89e-01 73.1% 44.4%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 41.0 3.98e-01 100.0% 79.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1488002 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.81 73.0 6.03e-01 98.5% 61.7%
3231719 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 52.0 4.72e-01 77.6% 61.1%
3257384 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 49.0 4.19e-01 73.1% 53.6%
3228053 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 47.0 5.07e-01 77.6% 90.9%
3249214 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 49.0 4.07e-01 80.6% 49.2%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.61e-01 97.0% 54.2%
None — 0.61 54.0 3.78e-01 100.0% 77.3%
4974811 5.1.3.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF26607 0.59 51.0 3.29e-01 97.0% 49.6%
3174821 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 48.0 3.15e-01 92.5% 61.5%
3935967 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.59 52.0 3.36e-01 100.0% 77.4%
3406442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.11e-01 95.5% 61.3%
5061430 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 50.0 3.45e-01 97.0% 77.4%
5034411 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.06e-01 95.5% 51.1%
4783165 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.57 48.0 3.65e-01 95.5% 95.3%
4931190 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.56 43.0 3.08e-01 82.1% 84.3%
3668331 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.13e-01 100.0% 53.1%
3599752 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.92e-01 97.0% 69.1%
2526900 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 2.73e-01 95.5% 59.8%
3412271 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 48.0 3.52e-01 100.0% 70.0%
4398495 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.54 43.0 2.52e-01 94.0% 31.9%
5022797 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.54 48.0 3.36e-01 100.0% 50.2%
3692244 5.1.4.436 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.52 42.0 2.41e-01 95.5% 26.0%
3591236 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.55e-01 97.0% 27.9%
3786015 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 42.0 2.46e-01 97.0% 23.3%
1144799 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 40.0 3.16e-01 92.5% 85.6%