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OQ870554.1__WKV24048.1__PSYJYH_000013__00013

Bact-Vir

OQ870554.1__WKV24048.1__PSYJYH_000013__00013

Identity

Accession:
OQ870554 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.73 52.0 3.12e-01 74.6% 23.5%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.71 49.0 4.40e-01 72.9% 51.2%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.69 50.0 4.46e-01 76.3% 70.4%
2ychA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 48.0 3.69e-01 71.2% 62.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.68 47.0 4.15e-01 72.9% 50.0%
2ya0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 53.0 4.41e-01 84.7% 100.0%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.68 49.0 3.69e-01 76.3% 77.1%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 52.0 4.04e-01 84.7% 100.0%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 49.0 4.20e-01 79.7% 53.7%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.66 50.0 3.82e-01 83.1% 97.9%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 51.0 3.88e-01 86.4% 75.3%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 53.0 3.31e-01 91.5% 43.7%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 46.0 3.91e-01 76.3% 46.3%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 52.0 3.24e-01 91.5% 30.0%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 4.30e-01 71.2% 71.4%
3wt0A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 45.0 3.26e-01 74.6% 64.4%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.64 48.0 3.45e-01 81.4% 41.2%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.63 43.0 4.16e-01 78.0% 61.4%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 48.0 4.14e-01 81.4% 73.3%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.63 45.0 3.58e-01 76.3% 38.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 3.69e-01 89.8% 42.2%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.13e-01 91.5% 37.8%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.77e-01 89.8% 61.3%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 4.25e-01 86.4% 77.6%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 3.87e-01 98.3% 90.4%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.60 46.0 3.90e-01 88.1% 49.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.60 45.0 3.88e-01 81.4% 71.3%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 49.0 3.09e-01 100.0% 33.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.59 45.0 3.56e-01 91.5% 37.5%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 4.14e-01 78.0% 70.8%
3kuvB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 3.78e-01 94.9% 93.2%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.70e-01 94.9% 57.9%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 3.33e-01 74.6% 84.3%
2nvwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 43.0 3.04e-01 83.1% 26.7%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.58 46.0 3.66e-01 93.2% 72.6%
3l20A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 39.0 2.93e-01 71.2% 27.3%
3mdqA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.58 43.0 3.03e-01 79.7% 31.7%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.57 44.0 3.32e-01 86.4% 70.1%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.57 41.0 3.68e-01 78.0% 100.0%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.88e-01 93.2% 36.4%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 40.0 3.12e-01 76.3% 40.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.91e-01 100.0% 39.3%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.54 40.0 2.97e-01 83.1% 74.6%
4nvrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 2.71e-01 89.8% 71.2%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 43.0 2.91e-01 94.9% 49.0%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.53 41.0 3.28e-01 93.2% 39.6%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 2.81e-01 72.9% 28.4%
4ix3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.06e-01 76.3% 79.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.82e-01 93.2% 69.8%
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 36.0 2.17e-01 81.4% 9.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.44e-01 94.9% 100.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.75 62.0 5.29e-01 91.5% 73.7%
3789654 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 50.0 4.12e-01 71.2% 45.7%
3214097 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.73 50.0 4.41e-01 71.2% 56.5%
3264756 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.73 61.0 5.09e-01 91.5% 70.0%
3931156 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 52.0 4.89e-01 74.6% 65.7%
3266531 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.71 48.0 3.40e-01 71.2% 24.8%
5076085 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.71 52.0 3.53e-01 78.0% 39.5%
3267889 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.70 53.0 3.24e-01 81.4% 42.6%
3261529 5.1.5.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.70 58.0 3.49e-01 89.8% 27.7%
3365419 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.69 56.0 4.20e-01 86.4% 85.0%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 54.0 3.31e-01 88.1% 40.0%
3933425 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 50.0 4.08e-01 79.7% 46.1%
4979039 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 48.0 3.29e-01 74.6% 39.2%
3615430 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 52.0 4.30e-01 81.4% 84.0%
4961801 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 49.0 3.36e-01 76.3% 40.5%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.67 48.0 4.30e-01 78.0% 55.0%
3705941 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 50.0 4.54e-01 79.7% 77.5%
3722450 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.67 44.0 3.31e-01 76.3% 27.6%
3737880 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.66 56.0 3.93e-01 94.9% 45.3%
3794101 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.66 52.0 3.59e-01 88.1% 31.0%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 54.0 4.02e-01 88.1% 61.4%
5019486 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.65 51.0 4.06e-01 84.7% 55.8%
3255575 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 50.0 3.15e-01 83.1% 91.9%
3404339 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.65 50.0 3.82e-01 83.1% 40.7%
3510918 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 51.0 3.92e-01 86.4% 57.0%
3980370 241.13.1.0 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.64 47.0 3.47e-01 76.3% 61.4%
3709245 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.04e-01 88.1% 51.8%
3484308 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 52.0 3.16e-01 94.9% 70.1%
3802207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 49.0 3.08e-01 84.7% 81.6%
4929818 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.63 48.0 3.69e-01 81.4% 42.2%
4027047 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.63 53.0 4.07e-01 94.9% 77.1%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 46.0 3.82e-01 81.4% 43.5%
3244141 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.62 48.0 3.00e-01 88.1% 52.8%
3676383 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.62 48.0 2.90e-01 86.4% 37.7%
3740272 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.62 51.0 3.10e-01 91.5% 26.0%
3168516 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 45.0 3.36e-01 76.3% 42.7%
3940470 5.1.4.320 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.61 53.0 3.25e-01 98.3% 91.4%
1310956 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 48.0 3.09e-01 91.5% 54.8%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.61 46.0 3.86e-01 83.1% 49.5%
3217309 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 43.0 3.79e-01 74.6% 71.1%
3275111 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.61 48.0 3.08e-01 91.5% 50.0%
3960441 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 49.0 3.32e-01 94.9% 34.0%
3579887 5.1.5.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.59 47.0 3.10e-01 91.5% 67.4%
None 0.59 47.0 2.95e-01 88.1% 97.5%
3794632 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.57 41.0 3.11e-01 76.3% 35.8%
3851887 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 48.0 3.60e-01 98.3% 75.6%
3593387 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.19e-01 76.3% 36.6%
3714907 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 46.0 2.90e-01 91.5% 32.9%
3444858 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.56 43.0 2.70e-01 84.7% 58.3%
4352332 3283.1.1.1 a+b two layers › Nitrogen fixation protein › Nitrogen fixation protein › Nitrogen fixation protein › DUF269 0.56 47.0 3.64e-01 94.9% 46.4%
5058622 5.1.9.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component 0.55 44.0 3.09e-01 100.0% 72.0%
3995842 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 41.0 2.90e-01 88.1% 38.7%
3299594 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.51 39.0 2.96e-01 91.5% 49.7%
5045772 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.30e-01 89.8% 67.8%
4950122 211.1.1.5 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_2 0.50 36.0 3.24e-01 78.0% 53.3%