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OQ884028.1__WNO29629.1__X__00013

Bact-Vir

OQ884028.1__WNO29629.1__X__00013

Identity

Accession:
OQ884028 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Koutsourovirus› Enterobacter_phage_SDFMU_Pec

TaxID: 3076136

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-114
PDB
Domain cluster: rep: OM868075.1__UPT53026.1__X__00089__D7-115
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 55.2 5.70e-15 47.8% 95.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 27.0 3.37e-01 85.9% 67.3%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.58 33.0 3.77e-01 80.4% 78.1%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 24.0 3.36e-01 79.3% 97.1%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 25.0 3.36e-01 77.2% 86.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 26.0 3.16e-01 85.9% 71.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 25.0 3.26e-01 78.3% 85.4%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 24.0 3.14e-01 76.1% 90.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.93 89.0 8.22e-01 98.9% 96.4%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.83 77.0 7.11e-01 100.0% 92.2%
3988577 4.16.1.1 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like › Strep_his_triad 0.60 27.0 3.28e-01 85.9% 61.7%
5049139 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 39.0 3.82e-01 70.7% 88.0%
5038850 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 39.0 4.02e-01 72.8% 90.0%
3979499 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.54 34.0 3.42e-01 91.3% 62.1%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 26.0 3.09e-01 76.1% 70.0%
3706087 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 27.0 3.15e-01 79.3% 71.7%
3840141 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.51 26.0 2.76e-01 81.5% 53.8%
3989040 4.16.1.0 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like 0.51 28.0 3.39e-01 92.4% 89.1%
3625456 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.51 28.0 3.32e-01 76.1% 82.8%
3595891 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.33e-01 92.4% 58.5%
None — 0.50 42.0 2.75e-01 92.4% 30.6%
D2 medium residues 129-200
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.78 60.0 6.62e-01 83.3% 100.0%
3sftA00 3.40.50.180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain 0.65 50.0 3.73e-01 84.7% 50.8%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 3.15e-01 73.6% 31.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.59 42.0 3.60e-01 76.4% 54.4%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 43.0 3.54e-01 79.2% 68.1%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 40.0 3.59e-01 77.8% 79.6%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 39.0 3.02e-01 79.2% 86.0%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 45.0 3.67e-01 95.8% 83.1%
2memA00 3.90.1150.190 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain 0.52 42.0 3.61e-01 90.3% 69.7%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 35.0 2.83e-01 72.2% 50.3%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 38.0 2.97e-01 79.2% 54.2%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 36.0 2.86e-01 75.0% 51.4%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 42.0 2.99e-01 100.0% 78.1%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 37.0 3.50e-01 93.1% 62.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995163 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.65 50.0 3.51e-01 84.7% 30.0%
4954188 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 45.0 3.59e-01 73.6% 63.1%
3890751 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 4.12e-01 73.6% 56.7%
3499134 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.62 43.0 3.46e-01 72.2% 74.3%
4308725 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.62 44.0 3.18e-01 75.0% 76.3%
4025434 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.59 40.0 3.96e-01 93.1% 68.0%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 43.0 4.00e-01 87.5% 62.2%
4972768 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 46.0 3.22e-01 94.4% 76.8%
3223614 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 39.0 2.67e-01 70.8% 85.1%
5061423 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 45.0 2.97e-01 91.7% 68.7%
5050692 2002.1.1.139 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE 0.56 39.0 2.59e-01 73.6% 92.9%
4091986 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.55 39.0 3.35e-01 73.6% 63.5%
3797651 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 40.0 3.82e-01 93.1% 64.4%
5082053 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.02e-01 88.9% 41.2%
4936812 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 40.0 3.42e-01 81.9% 60.8%
3991383 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 3.86e-01 98.6% 70.0%
3818641 109.4.1.2070 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, E_motif 0.53 41.0 2.69e-01 87.5% 31.6%
3367891 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.53 41.0 2.71e-01 84.7% 34.7%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.32e-01 87.5% 76.8%
4996058 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 37.0 3.25e-01 75.0% 74.8%
4370025 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 37.0 3.39e-01 77.8% 86.7%
3325708 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 40.0 2.75e-01 86.1% 38.2%
3423625 109.4.1.1371 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.52 39.0 2.40e-01 86.1% 20.2%
3829044 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.52 39.0 2.73e-01 86.1% 40.0%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.51 44.0 3.41e-01 94.4% 51.0%
3646348 101.1.2.493 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26557 0.51 43.0 3.68e-01 98.6% 97.6%
5042930 3563.1.1.1 ↗ alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.50 38.0 2.65e-01 80.6% 63.3%
3649366 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.50 37.0 3.55e-01 80.6% 67.1%
3309335 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.50 39.0 2.49e-01 88.9% 24.3%