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OQ921338.1__WIT26243.1__X__00047

Bact-Vir

OQ921338.1__WIT26243.1__X__00047

Identity

Accession:
OQ921338 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1L3

TaxID: 3053432

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-98
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.62 42.0 4.63e-01 77.0% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.29e-01 77.0% 83.9%
2m6nA00 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 37.0 4.09e-01 72.1% 84.8%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.18e-01 77.0% 86.4%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 42.0 3.67e-01 80.3% 85.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.10e-01 75.4% 87.5%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.57 38.0 3.23e-01 70.5% 83.0%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 46.0 3.81e-01 95.1% 84.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 48.0 4.43e-01 98.4% 85.5%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 37.0 3.69e-01 77.0% 66.1%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 46.0 3.45e-01 100.0% 70.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 47.0 3.98e-01 100.0% 56.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 45.0 3.40e-01 98.4% 48.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.80e-01 73.8% 98.3%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.56e-01 86.9% 85.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.82e-01 77.0% 74.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.40e-01 86.9% 77.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 29.0 3.12e-01 95.1% 56.9%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.31e-01 83.6% 87.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.36e-01 85.2% 88.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.00e-01 91.8% 88.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 42.0 3.23e-01 96.7% 67.8%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.71e-01 91.8% 61.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.53 39.0 2.86e-01 85.2% 56.8%
2yzcA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.53 42.0 2.82e-01 95.1% 67.6%
3kbqB00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.53 39.0 2.95e-01 83.6% 40.2%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.52 35.0 2.79e-01 70.5% 75.5%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.35e-01 80.3% 57.4%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.50 41.0 3.67e-01 98.4% 63.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.92e-01 93.4% 83.6%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 40.0 3.61e-01 91.8% 65.9%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 38.0 2.63e-01 91.8% 96.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028955 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 48.0 5.60e-01 75.4% 100.0%
3587545 375.1.1.198 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2901 0.64 41.0 4.60e-01 85.2% 100.0%
3593875 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 39.0 4.08e-01 96.7% 72.7%
4968081 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.60 47.0 4.90e-01 83.6% 92.7%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.58 40.0 4.15e-01 77.0% 80.0%
3174935 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.68e-01 82.0% 24.4%
4275625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.58 42.0 4.25e-01 82.0% 91.7%
3934671 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 44.0 4.00e-01 86.9% 82.4%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.83e-01 77.0% 65.3%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 40.0 3.96e-01 77.0% 73.8%
3405941 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.56 41.0 4.02e-01 78.7% 73.5%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.98e-01 77.0% 72.3%
3757091 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.54e-01 90.2% 80.0%
3340900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.94e-01 77.0% 73.8%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 3.93e-01 77.0% 73.8%
1906032 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 44.0 3.35e-01 93.4% 55.6%
3585692 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 38.0 2.91e-01 72.1% 39.3%
3606484 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.55 43.0 3.41e-01 93.4% 61.3%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 36.0 3.86e-01 95.1% 84.0%
3708379 5.1.5.208 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.55 42.0 2.37e-01 85.2% 10.2%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 45.0 4.00e-01 91.8% 71.1%
3628119 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 42.0 3.93e-01 86.9% 87.5%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 46.0 4.16e-01 95.1% 87.1%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 46.0 4.25e-01 95.1% 91.3%
3789912 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 43.0 3.97e-01 90.2% 77.6%
None — 0.55 38.0 3.12e-01 73.8% 50.0%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 45.0 3.83e-01 91.8% 68.0%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 40.0 3.20e-01 82.0% 88.6%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 42.0 4.09e-01 90.2% 89.0%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.64e-01 95.1% 82.5%
3777243 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.54 43.0 3.43e-01 91.8% 69.6%
3939093 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 41.0 3.95e-01 86.9% 89.3%
3483268 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 41.0 3.87e-01 83.6% 77.3%
3404585 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 34.0 3.62e-01 90.2% 76.0%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 45.0 3.79e-01 95.1% 64.8%
1851179 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 42.0 4.08e-01 90.2% 85.7%
3723092 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.53 40.0 3.36e-01 86.9% 89.2%
3241447 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 3.43e-01 90.2% 69.2%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.53 42.0 3.40e-01 93.4% 80.7%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 40.0 3.88e-01 90.2% 89.3%
3412178 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 41.0 4.00e-01 86.9% 89.9%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 40.0 3.64e-01 86.9% 68.9%
3475247 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.52 42.0 4.05e-01 90.2% 87.1%
3496211 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 41.0 4.00e-01 90.2% 87.1%
3578905 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 40.0 3.63e-01 90.2% 80.0%
4400936 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.74e-01 80.3% 90.0%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 3.70e-01 91.8% 68.9%
3472296 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.51 40.0 3.83e-01 90.2% 80.0%
3478153 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.51 40.0 3.90e-01 90.2% 87.1%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 3.01e-01 93.4% 32.1%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 40.0 3.63e-01 91.8% 67.8%
3547084 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 40.0 3.64e-01 91.8% 63.3%
3287340 234.3.1.1 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › Colicin_D 0.51 36.0 3.30e-01 82.0% 56.8%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.51 40.0 3.97e-01 90.2% 93.8%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 3.65e-01 91.8% 64.4%
3610705 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.50 38.0 2.37e-01 88.5% 58.2%
3715091 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.50 36.0 3.59e-01 78.7% 78.5%
3738126 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 41.0 3.69e-01 93.4% 67.8%
3307036 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.50 34.0 3.67e-01 78.7% 90.0%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 40.0 3.38e-01 93.4% 55.7%
4940664 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.50 42.0 3.79e-01 95.1% 81.2%