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OQ921339.1__WIT26497.1__X__00100

Bact-Vir

OQ921339.1__WIT26497.1__X__00100

Identity

Accession:
OQ921339 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1L4

TaxID: 3053433

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.61 47.0 3.45e-01 83.8% 77.0%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.58 50.0 4.88e-01 98.5% 90.7%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.58 44.0 2.79e-01 86.8% 32.6%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.57 44.0 2.71e-01 83.8% 62.3%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.96e-01 76.5% 79.2%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.55 42.0 2.73e-01 86.8% 51.9%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 38.0 2.71e-01 75.0% 40.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.61e-01 72.1% 80.8%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.53 41.0 3.64e-01 88.2% 89.8%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.69e-01 75.0% 85.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 39.0 3.93e-01 85.3% 82.1%
2ypdB01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.52 44.0 2.91e-01 98.5% 45.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 39.0 3.63e-01 83.8% 67.0%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.51 35.0 3.64e-01 76.5% 80.3%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.17e-01 85.3% 63.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.42e-01 77.9% 74.2%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.50 39.0 3.46e-01 85.3% 79.4%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.53e-01 82.4% 81.2%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.45e-01 79.4% 77.6%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.61e-01 85.3% 81.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3308386 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 53.0 3.93e-01 100.0% 81.5%
5019931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.19e-01 100.0% 66.0%
5070038 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.60e-01 100.0% 67.0%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.61 49.0 4.36e-01 89.7% 90.0%
5069502 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.70e-01 100.0% 72.6%
3974773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.26e-01 89.7% 87.6%
3358714 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.11e-01 100.0% 55.5%
4465932 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.58 44.0 3.01e-01 85.3% 60.3%
3823825 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.58 43.0 4.32e-01 77.9% 81.4%
4365970 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 48.0 4.26e-01 100.0% 86.4%
3726363 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.97e-01 100.0% 69.3%
5054005 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.68e-01 72.1% 75.6%
5062173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.15e-01 100.0% 60.0%
3786841 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.57 41.0 3.56e-01 76.5% 56.2%
3581591 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.56 38.0 3.52e-01 72.1% 69.5%
3822958 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 45.0 3.54e-01 94.1% 73.9%
3626211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.50e-01 70.6% 77.9%
3320650 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 43.0 3.93e-01 89.7% 77.0%
5005057 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.55 40.0 3.38e-01 76.5% 93.0%
4586962 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.55 44.0 3.79e-01 94.1% 78.3%
4962131 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.55 37.0 3.38e-01 70.6% 57.9%
3804069 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.55 40.0 3.70e-01 82.4% 72.6%
5047904 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.54 37.0 3.46e-01 72.1% 74.4%
5023102 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 40.0 3.59e-01 85.3% 61.8%
4933929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.80e-01 77.9% 85.3%
4926938 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.54e-01 70.6% 70.0%
3801792 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 38.0 3.72e-01 76.5% 70.7%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.53 45.0 3.05e-01 100.0% 92.4%
5036096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.46e-01 82.4% 90.9%
3280644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.94e-01 95.6% 77.8%
3704475 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.52 39.0 2.90e-01 85.3% 36.3%
4957076 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.52 35.0 3.72e-01 70.6% 83.3%
5042174 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.51 39.0 3.28e-01 88.2% 83.7%
None — 0.51 39.0 3.20e-01 86.8% 80.7%
5017852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.56e-01 76.5% 78.7%
5073726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.73e-01 88.2% 85.9%
3970713 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.47e-01 77.9% 78.8%
5024287 103.5.1.11 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 0.51 36.0 3.52e-01 76.5% 76.0%
1687145 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 37.0 3.36e-01 80.9% 74.5%
3655694 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.50 34.0 3.19e-01 70.6% 60.0%
D2 medium residues 74-123
PDB
Domain cluster: rep: NC_029048.2__YP_009221761.1__PHICD211_20157__00176__D4-49
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.71 51.0 5.03e-01 78.0% 70.9%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.70 50.0 3.78e-01 100.0% 30.9%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 45.0 4.01e-01 100.0% 44.6%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 44.0 4.24e-01 100.0% 61.4%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.62 51.0 4.68e-01 100.0% 68.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 3.84e-01 100.0% 40.7%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 42.0 3.38e-01 100.0% 35.0%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 4.01e-01 100.0% 56.2%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 3.95e-01 100.0% 58.2%
4v3lC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 49.0 4.53e-01 98.0% 73.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 42.0 3.55e-01 100.0% 42.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.55e-01 100.0% 41.0%
4bs9A04 3.30.40.250 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.59 45.0 3.84e-01 88.0% 86.7%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.57 50.0 4.45e-01 100.0% 94.4%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 3.69e-01 100.0% 72.4%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 3.79e-01 100.0% 79.2%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 45.0 2.94e-01 100.0% 20.4%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 3.44e-01 100.0% 35.5%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.44e-01 100.0% 42.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.89e-01 100.0% 65.3%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 40.0 3.93e-01 88.0% 80.7%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.16e-01 98.0% 59.5%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 38.0 3.12e-01 88.0% 95.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.51 38.0 3.69e-01 94.0% 73.2%
3p9dA03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.51 35.0 2.65e-01 78.0% 88.2%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 36.0 2.28e-01 82.0% 89.6%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.53e-01 100.0% 78.8%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.51 37.0 2.82e-01 92.0% 48.2%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.23e-01 100.0% 47.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733166 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.79 67.0 6.57e-01 100.0% 87.3%
4420729 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 50.0 5.69e-01 70.0% 100.0%
3587295 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 65.0 5.98e-01 100.0% 89.2%
3940069 904.1.1.14 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › SNAPC3 0.71 51.0 4.79e-01 76.0% 63.3%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.70 50.0 4.92e-01 78.0% 69.6%
4110762 376.1.1.14 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › UPF1_Zn_bind 0.68 51.0 3.65e-01 84.0% 44.0%
3812458 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.66 57.0 4.01e-01 100.0% 29.4%
3461511 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 56.0 4.21e-01 98.0% 42.3%
3819521 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 53.0 5.19e-01 92.0% 92.7%
3700573 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 58.0 4.71e-01 100.0% 85.3%
3821671 376.1.1.63 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 0.66 56.0 4.25e-01 98.0% 43.2%
4654276 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.65 54.0 4.36e-01 98.0% 52.4%
None — 0.65 53.0 3.59e-01 92.0% 25.8%
3607646 209.1.1.11 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › DUF5075 0.64 53.0 3.54e-01 100.0% 53.0%
4991423 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 45.0 4.56e-01 78.0% 80.0%
3720527 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 43.0 2.99e-01 72.0% 64.2%
4944275 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 52.0 4.76e-01 98.0% 91.4%
3384844 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 52.0 4.67e-01 98.0% 70.7%
3677216 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.62 52.0 4.99e-01 100.0% 95.0%
5052356 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 49.0 4.61e-01 92.0% 83.1%
3460948 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 52.0 4.36e-01 98.0% 76.7%
3448322 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.62 53.0 5.06e-01 100.0% 83.3%
3315604 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 51.0 4.75e-01 96.0% 76.9%
3808262 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 51.0 4.13e-01 98.0% 53.3%
3608007 209.1.1.11 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › DUF5075 0.62 51.0 3.55e-01 100.0% 62.6%
3332568 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 51.0 4.34e-01 98.0% 56.7%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 47.0 4.41e-01 86.0% 100.0%
5044388 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.39e-01 86.0% 76.0%
3805691 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 51.0 4.10e-01 100.0% 50.9%
3830500 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.61 51.0 4.86e-01 98.0% 81.7%
136515 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 44.0 4.06e-01 100.0% 58.8%
3346269 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 50.0 4.26e-01 98.0% 58.9%
3211871 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.60 40.0 2.63e-01 96.0% 14.3%
3343538 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 50.0 4.47e-01 98.0% 72.0%
3215090 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.84e-01 100.0% 90.8%
3819080 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 50.0 4.46e-01 98.0% 69.3%
3413229 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 47.0 4.78e-01 96.0% 92.0%
5031658 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 4.73e-01 90.0% 94.0%
3677066 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 48.0 4.24e-01 96.0% 76.2%
3815246 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 50.0 4.63e-01 98.0% 89.2%
3266842 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 3.81e-01 100.0% 72.8%
3831568 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.58 50.0 4.44e-01 100.0% 66.7%
None — 0.58 50.0 3.51e-01 100.0% 49.4%
3665640 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.58 41.0 2.93e-01 78.0% 87.6%
3739035 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 48.0 4.51e-01 98.0% 75.0%
3665380 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 47.0 4.19e-01 98.0% 73.8%
3445801 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.58 49.0 4.68e-01 100.0% 85.0%
3684414 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 47.0 4.16e-01 98.0% 78.8%
3465532 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 45.0 4.11e-01 90.0% 82.9%
3646651 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.57 43.0 4.25e-01 86.0% 100.0%
3425799 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 46.0 4.15e-01 98.0% 74.7%
3664051 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 46.0 3.92e-01 100.0% 57.9%
3501262 101.1.6.18 ↗ alpha arrays › HTH › HTH › TrpR › Zn_ribbon_ISL3 0.56 38.0 2.78e-01 70.0% 44.8%
3803132 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 44.0 4.59e-01 90.0% 97.8%
2167777 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.56 44.0 3.78e-01 92.0% 65.2%
5022351 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.56 44.0 2.95e-01 100.0% 22.6%
3785904 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.27e-01 90.0% 82.0%
4990133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 44.0 4.34e-01 92.0% 100.0%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.92e-01 100.0% 70.0%
4938633 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 42.0 3.10e-01 86.0% 31.9%
3505220 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 46.0 3.40e-01 100.0% 60.4%
3174886 708.1.2.5 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Mss4 0.54 41.0 3.15e-01 92.0% 45.7%
4950639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 2.99e-01 90.0% 79.3%
5069567 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 34.0 3.11e-01 84.0% 44.3%
3571716 2.1.1.188 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.53 46.0 3.82e-01 100.0% 88.9%
3512937 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 44.0 3.33e-01 100.0% 60.8%
3954203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 40.0 3.55e-01 90.0% 56.0%
3817655 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 39.0 3.10e-01 88.0% 56.8%
3405271 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.53 46.0 2.92e-01 96.0% 78.4%
3751411 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 40.0 3.34e-01 96.0% 46.7%
3538869 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 45.0 3.18e-01 100.0% 30.9%
5029199 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 39.0 3.44e-01 86.0% 65.0%
3184940 109.4.1.2080 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29875 0.51 36.0 2.21e-01 74.0% 11.5%
3174350 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 42.0 3.90e-01 100.0% 72.3%