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OQ921339.1__WIT26534.1__X__00137

Bact-Vir

OQ921339.1__WIT26534.1__X__00137

Identity

Accession:
OQ921339 ↗
Kingdom:
phage

Quality

64.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1L4

TaxID: 3053433

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-93
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.67 54.0 4.59e-01 89.1% 78.1%
2vhfB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 53.0 3.31e-01 93.8% 20.1%
2m13A00 4.10.640.40 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › Cytoplasmic polyadenylation element-binding protein, ZZ domain 0.62 44.0 4.44e-01 85.9% 75.4%
4tn3A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 38.0 4.33e-01 85.9% 100.0%
1wwyA00 2.60.120.470 Mainly Beta › Sandwich › Jelly Rolls › PITH domain 0.58 41.0 3.07e-01 75.0% 37.4%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 48.0 4.67e-01 96.9% 100.0%
3hctA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 48.0 4.17e-01 98.4% 81.7%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 47.0 4.58e-01 98.4% 93.2%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.57 44.0 3.11e-01 85.9% 88.9%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 47.0 4.06e-01 100.0% 66.1%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 46.0 4.12e-01 95.3% 83.0%
4fo9A02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 44.0 3.72e-01 92.2% 58.1%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.53 37.0 3.49e-01 75.0% 79.0%
1j2oA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 44.0 3.72e-01 96.9% 98.2%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 39.0 4.07e-01 84.4% 94.9%
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 37.0 3.44e-01 79.7% 72.1%
3vh8G01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.13e-01 71.9% 49.5%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.63e-01 76.6% 43.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3215621 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.74 52.0 5.60e-01 89.1% 87.3%
3209234 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 56.0 5.95e-01 95.3% 96.4%
3689756 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 4.13e-01 96.9% 36.6%
3726259 904.1.1.3 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.66 53.0 5.50e-01 93.8% 93.3%
3997129 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.65 49.0 5.29e-01 85.9% 94.5%
3905475 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.64 51.0 5.42e-01 89.1% 100.0%
3407704 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.64 53.0 5.44e-01 89.1% 96.7%
3186980 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.63 52.0 5.30e-01 89.1% 100.0%
3535070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.13e-01 89.1% 92.3%
3486602 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 52.0 4.98e-01 92.2% 78.7%
4209657 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.62 52.0 5.39e-01 92.2% 100.0%
4500222 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.22e-01 93.8% 17.7%
3939167 376.1.1.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29721 0.61 48.0 4.14e-01 89.1% 82.6%
3275206 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 53.0 3.69e-01 95.3% 30.5%
4306719 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 49.0 4.88e-01 89.1% 100.0%
3741503 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 49.0 4.14e-01 89.1% 67.6%
3219408 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 51.0 3.18e-01 98.4% 24.7%
3174403 378.1.1.14 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › AI2M-like_HNH 0.57 39.0 3.96e-01 73.4% 93.8%
3223788 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 47.0 3.84e-01 95.3% 52.8%
3926722 376.1.1.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ 0.56 45.0 3.70e-01 92.2% 56.0%
3718434 376.1.1.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ 0.56 45.0 3.78e-01 93.8% 56.7%
3925196 376.1.1.6 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-MIZ 0.55 44.0 3.66e-01 92.2% 56.0%
3324521 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.55 46.0 4.60e-01 98.4% 98.5%
3478904 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 2.92e-01 73.4% 51.0%
4957328 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.17e-01 73.4% 54.3%
3517794 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.53 42.0 3.81e-01 90.6% 91.1%
3377682 10.2.1.70 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › SURNod19 0.52 36.0 2.68e-01 73.4% 62.6%
3398159 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 37.0 3.01e-01 93.8% 37.0%
4014325 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 4.09e-01 92.2% 85.7%
3918037 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 41.0 4.12e-01 93.8% 95.4%