←Back to structures

OQ921339.1__WIT26585.1__X__00188

Bact-Vir

OQ921339.1__WIT26585.1__X__00188

Identity

Accession:
OQ921339 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1L4

TaxID: 3053433

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-132
PDB
Domain cluster: rep: NC_024788.1__YP_009055966.1__LD11_gp201__00201__D4-94
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04542.21 best Sigma70_r2 36.9 3.50e-09 58.7% 81.7%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.89 58.0 7.12e-01 70.2% 100.0%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.86 59.0 7.02e-01 75.2% 100.0%
1sigA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.85 68.0 4.90e-01 83.5% 99.7%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 64.0 7.13e-01 91.7% 100.0%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.80 72.0 6.19e-01 95.9% 98.9%
5yixA00 1.10.601.10 Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor 0.72 58.0 4.18e-01 84.3% 100.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 44.0 4.95e-01 95.0% 95.5%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.60 47.0 4.25e-01 86.0% 67.2%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 32.0 3.05e-01 86.8% 42.6%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.55 40.0 3.87e-01 76.0% 91.9%
7c4sB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 48.0 3.69e-01 100.0% 50.7%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 37.0 3.75e-01 74.4% 84.2%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.51 36.0 3.70e-01 73.6% 76.1%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 37.0 3.77e-01 76.0% 92.3%
5eowA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 3.26e-01 100.0% 94.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971939 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.91 60.0 7.21e-01 71.1% 95.3%
3067828 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.91 56.0 7.04e-01 71.1% 97.4%
3278088 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.90 68.0 7.21e-01 83.5% 85.5%
4524644 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.89 71.0 5.82e-01 93.4% 49.3%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.87 73.0 5.73e-01 95.9% 46.7%
None — 0.87 72.0 5.77e-01 95.9% 47.7%
5030154 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.86 76.0 7.63e-01 91.7% 100.0%
4274766 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.86 70.0 7.54e-01 92.6% 98.1%
4624390 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.84 70.0 7.19e-01 92.6% 91.3%
4053923 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.84 70.0 7.47e-01 92.6% 100.0%
4349095 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.83 68.0 6.99e-01 90.1% 88.7%
3972284 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 69.0 7.15e-01 91.7% 91.3%
4513974 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.83 73.0 7.41e-01 95.9% 93.3%
4272325 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.83 66.0 5.39e-01 92.6% 48.1%
4218058 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.82 75.0 5.33e-01 95.9% 100.0%
4108773 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.82 75.0 5.32e-01 95.9% 100.0%
None — 0.82 72.0 5.04e-01 100.0% 32.0%
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 72.0 5.35e-01 99.2% 40.0%
4631806 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.82 75.0 6.20e-01 100.0% 58.5%
4484001 142.1.1.4 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner 0.82 69.0 4.82e-01 87.6% 100.0%
4225227 142.1.1.2 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner 0.82 75.0 5.14e-01 95.9% 100.0%
4319899 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.82 75.0 5.44e-01 95.9% 99.7%
4106336 142.1.1.4 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2,Sigma70_ner 0.82 70.0 4.98e-01 89.3% 100.0%
3090120 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.81 72.0 7.28e-01 100.0% 94.9%
3838866 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.81 74.0 5.05e-01 95.9% 92.5%
3978386 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 74.0 5.14e-01 95.9% 100.0%
4322147 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 77.0 4.95e-01 100.0% 66.4%
None — 0.81 74.0 6.53e-01 95.9% 87.9%
140810 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.81 72.0 6.22e-01 94.2% 98.9%
3963570 142.1.1.2 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2,Sigma70_ner 0.81 76.0 5.24e-01 99.2% 100.0%
3664504 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.80 71.0 6.40e-01 92.6% 91.8%
3386022 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.80 67.0 4.74e-01 87.6% 100.0%
3360961 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.80 73.0 6.34e-01 96.7% 85.1%
None — 0.79 69.0 5.30e-01 90.9% 62.0%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 69.0 5.29e-01 90.9% 62.0%
3339567 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.79 74.0 6.40e-01 100.0% 88.3%
4452096 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.79 72.0 6.02e-01 96.7% 99.5%
4269761 142.1.1.1 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2 0.79 72.0 6.03e-01 95.9% 100.0%
4056597 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 74.0 5.31e-01 100.0% 45.9%
None — 0.78 69.0 6.37e-01 93.4% 98.0%
3428775 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 73.0 5.27e-01 100.0% 47.9%
3590541 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.78 57.0 4.88e-01 87.6% 50.0%
3299379 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.77 70.0 6.44e-01 95.9% 99.3%
3828850 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.75 65.0 6.03e-01 92.6% 94.0%
3676572 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.74 63.0 5.52e-01 90.9% 84.6%
4233279 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 62.0 4.83e-01 89.3% 58.7%
5035554 3896.1.1.2 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › DUF92 0.64 52.0 4.35e-01 86.8% 84.8%
3756948 601.19.1.17 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 0.59 47.0 4.29e-01 86.8% 82.4%
5047572 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 42.0 3.42e-01 75.2% 70.8%
3923355 5079.1.1.1 ↗ alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.55 48.0 4.21e-01 97.5% 76.8%
3946501 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.55 49.0 4.16e-01 98.3% 95.0%
5040635 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.52 37.0 3.83e-01 73.6% 85.2%
5071300 601.27.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.51 45.0 3.99e-01 97.5% 79.4%
3940161 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 37.0 3.32e-01 76.0% 61.1%
3619004 601.1.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.50 36.0 3.67e-01 74.4% 89.2%
4045134 601.4.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.50 35.0 3.47e-01 71.1% 76.2%
D2 high residues 158-230
PDB
Domain cluster: rep: MN043729.1__QDP42999.1__Goe8_c02260__00215__D139-210
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 68.0 6.88e-01 84.9% 79.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 70.0 7.52e-01 87.7% 96.8%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.87 75.0 5.93e-01 98.6% 47.9%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 69.0 6.01e-01 91.8% 58.1%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 70.0 7.39e-01 95.9% 98.5%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 65.0 7.08e-01 90.4% 100.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 72.0 7.05e-01 100.0% 86.3%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.83 65.0 5.11e-01 83.6% 42.6%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 64.0 6.95e-01 83.6% 98.3%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 67.0 7.10e-01 94.5% 98.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 6.01e-01 74.0% 89.6%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.80 67.0 5.43e-01 90.4% 71.8%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 6.10e-01 72.6% 92.7%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.78 56.0 4.46e-01 78.1% 38.7%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 5.73e-01 87.7% 72.5%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.77e-01 84.9% 76.0%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.77 59.0 4.87e-01 80.8% 83.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 63.0 5.80e-01 91.8% 69.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.70e-01 84.9% 77.6%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 63.0 5.91e-01 91.8% 74.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 56.0 5.30e-01 89.0% 65.5%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 55.0 5.01e-01 76.7% 71.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.92e-01 76.7% 88.9%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 62.0 4.39e-01 91.8% 55.8%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 50.0 5.13e-01 72.6% 100.0%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.71 54.0 4.91e-01 79.5% 78.7%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.71 49.0 4.24e-01 71.2% 84.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.35e-01 72.6% 75.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 55.0 3.73e-01 83.6% 44.9%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.70 50.0 3.97e-01 75.3% 69.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 53.0 4.71e-01 82.2% 69.9%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 4.92e-01 100.0% 78.2%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 61.0 4.83e-01 100.0% 72.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 58.0 4.65e-01 100.0% 72.5%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 4.83e-01 100.0% 79.9%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 4.80e-01 100.0% 78.4%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.34e-01 74.0% 58.5%
2y1hB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.65 55.0 3.79e-01 94.5% 83.8%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 4.63e-01 100.0% 79.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.72e-01 100.0% 84.7%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 56.0 4.45e-01 100.0% 72.8%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 4.62e-01 100.0% 80.3%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.33e-01 100.0% 85.1%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 41.0 4.00e-01 71.2% 98.8%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.24e-01 100.0% 84.6%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.07e-01 100.0% 72.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 4.10e-01 100.0% 70.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.98e-01 100.0% 74.6%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 40.0 3.71e-01 87.7% 56.6%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.06e-01 100.0% 68.8%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 4.11e-01 93.2% 83.3%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4146353 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.91 77.0 7.50e-01 95.9% 82.5%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.91 78.0 5.27e-01 97.3% 27.9%
4944726 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.90 65.0 7.22e-01 76.7% 91.7%
2448404 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.89 67.0 7.30e-01 83.6% 95.0%
4237551 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 79.0 7.13e-01 100.0% 72.6%
4243530 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 69.0 7.29e-01 89.0% 90.8%
3972638 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 75.0 7.91e-01 95.9% 100.0%
3908306 101.1.1.101 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.89 61.0 6.73e-01 76.7% 86.7%
3281471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 72.0 7.01e-01 89.0% 78.8%
2330636 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 62.0 7.15e-01 78.1% 100.0%
3291331 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.88 75.0 7.31e-01 100.0% 83.7%
3616846 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 60.0 6.62e-01 72.6% 86.7%
3959929 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.88 77.0 7.46e-01 100.0% 86.3%
4140444 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.87 69.0 5.91e-01 91.8% 55.5%
4683324 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.87 69.0 5.91e-01 91.8% 55.5%
3959252 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 68.0 7.38e-01 84.9% 100.0%
4303963 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 74.0 7.41e-01 98.6% 89.3%
4520564 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 65.0 6.27e-01 83.6% 71.2%
None — 0.87 69.0 5.91e-01 91.8% 56.0%
None — 0.87 69.0 6.21e-01 90.4% 64.2%
4289285 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 75.0 6.98e-01 100.0% 76.7%
4372550 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 76.0 7.01e-01 100.0% 76.7%
3955987 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 73.0 6.59e-01 95.9% 69.5%
3834548 101.1.3.12 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.86 63.0 6.69e-01 76.7% 100.0%
3282225 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 75.0 7.27e-01 100.0% 86.3%
4439853 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 73.0 7.43e-01 100.0% 95.7%
4244028 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.85 61.0 6.68e-01 76.7% 90.0%
4160122 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.85 77.0 5.95e-01 100.0% 47.3%
None — 0.85 69.0 5.99e-01 91.8% 59.0%
None — 0.85 69.0 5.88e-01 91.8% 56.4%
4148347 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.85 67.0 5.88e-01 91.8% 58.7%
4037682 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.85 71.0 6.24e-01 91.8% 64.0%
3961841 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.85 71.0 7.32e-01 93.2% 94.3%
2813289 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.84 69.0 6.19e-01 91.8% 64.9%
None — 0.84 68.0 5.81e-01 91.8% 56.4%
4175748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 73.0 7.13e-01 98.6% 86.3%
4233279 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.84 71.0 4.82e-01 95.9% 27.5%
4980021 101.1.3.33 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 0.84 61.0 6.23e-01 76.7% 78.6%
3913655 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.84 69.0 6.64e-01 86.3% 98.8%
3284051 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 69.0 7.29e-01 95.9% 100.0%
3967026 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 74.0 7.34e-01 94.5% 93.3%
4388780 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.84 69.0 5.43e-01 98.6% 44.8%
3971149 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 76.0 7.38e-01 100.0% 90.0%
3964397 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 72.0 6.29e-01 98.6% 64.8%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 74.0 6.65e-01 100.0% 71.0%
3288090 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 71.0 7.30e-01 98.6% 97.1%
4304581 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.83 69.0 6.27e-01 91.8% 68.1%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 72.0 6.58e-01 98.6% 73.4%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.83 59.0 5.31e-01 74.0% 73.7%
None — 0.83 68.0 5.95e-01 91.8% 61.0%
4486973 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 73.0 6.95e-01 100.0% 82.4%
3967748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 74.0 6.98e-01 95.9% 83.5%
3959868 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.90e-01 97.3% 88.0%
3973360 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 73.0 7.49e-01 97.3% 100.0%
4205790 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 71.0 6.90e-01 98.6% 85.0%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 73.0 6.68e-01 97.3% 75.8%
4470607 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.82 69.0 5.81e-01 91.8% 56.5%
4336182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 68.0 6.36e-01 97.3% 74.4%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 70.0 4.80e-01 97.3% 28.2%
4202221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 68.0 7.05e-01 95.9% 95.6%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 72.0 6.25e-01 97.3% 70.0%
3286778 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 69.0 7.11e-01 95.9% 95.7%
3284011 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 70.0 7.13e-01 97.3% 97.1%
1810916 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.81 64.0 6.73e-01 86.3% 93.8%
149489 101.1.1.95 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like 0.81 65.0 6.36e-01 87.7% 78.8%
3793383 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 58.0 6.13e-01 75.3% 100.0%
4530655 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 68.0 6.12e-01 95.9% 67.0%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.81 55.0 6.13e-01 71.2% 92.7%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 74.0 6.58e-01 100.0% 73.0%
3973709 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 75.0 6.52e-01 100.0% 70.5%
3969325 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 71.0 7.28e-01 97.3% 100.0%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 71.0 7.12e-01 95.9% 96.0%
4683276 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 70.0 6.39e-01 100.0% 73.7%
4279016 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 69.0 6.74e-01 100.0% 86.3%
3284469 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 73.0 7.30e-01 100.0% 97.3%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.80 60.0 5.20e-01 78.1% 69.5%
3916395 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.80 68.0 5.93e-01 90.4% 69.5%
3288971 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.80 68.0 5.34e-01 94.5% 45.3%
None — 0.80 70.0 4.77e-01 95.9% 28.6%
3587471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 72.0 5.92e-01 97.3% 68.3%
3283374 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 72.0 6.55e-01 98.6% 75.8%
2464007 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 67.0 7.01e-01 95.9% 100.0%
3284461 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 4.65e-01 97.3% 27.6%
3961604 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 69.0 6.24e-01 100.0% 72.0%
3971665 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 70.0 6.93e-01 97.3% 96.0%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 67.0 6.53e-01 100.0% 86.3%
3284984 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.78 68.0 4.66e-01 98.6% 28.0%
3279596 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 70.0 5.13e-01 100.0% 38.4%
3951829 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 69.0 6.61e-01 100.0% 87.1%
3998881 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.89e-01 90.4% 77.5%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.53e-01 84.9% 76.8%
4577850 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 67.0 6.05e-01 98.6% 74.7%
3256356 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 55.0 5.89e-01 79.5% 87.5%
3620216 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.58e-01 83.6% 80.0%
3279339 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 68.0 5.01e-01 100.0% 40.5%
3974736 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 66.0 6.29e-01 100.0% 87.1%