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OQ921340.1__WIT26604.1__X__00012
Bact-VirOQ921340.1__WIT26604.1__X__00012
Identity
- Accession:
- OQ921340 ↗
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Taxonomy
TaxID: 3053434
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
rep: NC_012530.1__YP_002790789.1__lb338_phage_110__00110__D7-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24040.2 best | DUF7349 | 27.9 | 2.10e-06 | 93.6% | 84.0% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.72 | 57.0 | 5.14e-01 | 91.5% | 97.1% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.69 | 53.0 | 5.34e-01 | 100.0% | 91.3% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.64 | 52.0 | 4.81e-01 | 100.0% | 69.7% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.64 | 51.0 | 3.62e-01 | 100.0% | 90.4% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.62 | 45.0 | 2.77e-01 | 85.1% | 88.0% |
| 3vxvA00 | 3.30.890.10 | Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A | 0.60 | 34.0 | 3.05e-01 | 97.9% | 35.4% |
| 2d0bA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 47.0 | 4.05e-01 | 100.0% | 75.3% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 47.0 | 4.28e-01 | 97.9% | 94.4% |
| 3i45A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 46.0 | 3.05e-01 | 87.2% | 57.6% |
| 2omlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.57 | 44.0 | 3.71e-01 | 100.0% | 81.0% |
| 2dx0A00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 35.0 | 2.65e-01 | 100.0% | 22.2% |
| 4n0qA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 43.0 | 3.16e-01 | 91.5% | 74.8% |
| 4evqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 42.0 | 2.82e-01 | 87.2% | 55.4% |
| 1jdpB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 39.0 | 2.66e-01 | 85.1% | 55.4% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 3.24e-01 | 100.0% | 78.1% |
| 2wjwA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 40.0 | 2.75e-01 | 91.5% | 48.8% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 44.0 | 3.24e-01 | 100.0% | 81.9% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.53 | 40.0 | 4.04e-01 | 87.2% | 93.6% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.52 | 39.0 | 2.94e-01 | 100.0% | 40.9% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 37.0 | 2.94e-01 | 83.0% | 76.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979633 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.69 | 58.0 | 5.31e-01 | 100.0% | 70.8% |
| 5035097 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 53.0 | 5.38e-01 | 97.9% | 93.3% |
| 4946969 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 58.0 | 5.78e-01 | 100.0% | 94.0% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 52.0 | 5.26e-01 | 95.7% | 91.1% |
| 4021638 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.67 | 55.0 | 5.04e-01 | 100.0% | 70.8% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 55.0 | 5.46e-01 | 100.0% | 92.0% |
| 4956746 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.66 | 56.0 | 5.58e-01 | 100.0% | 94.0% |
| 4509443 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.65 | 51.0 | 4.74e-01 | 100.0% | 67.7% |
| 4975580 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.65 | 54.0 | 5.09e-01 | 100.0% | 76.7% |
| 3730580 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.65 | 52.0 | 4.86e-01 | 100.0% | 70.8% |
| 4939413 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.65 | 54.0 | 5.32e-01 | 97.9% | 96.0% |
| 4982789 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 53.0 | 4.78e-01 | 97.9% | 67.7% |
| 5028408 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.64 | 53.0 | 5.29e-01 | 100.0% | 94.0% |
| 5036241 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 53.0 | 4.83e-01 | 100.0% | 70.8% |
| 3237590 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.63 | 54.0 | 4.26e-01 | 100.0% | 93.3% |
| 3060783 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.63 | 52.0 | 4.85e-01 | 100.0% | 75.8% |
| 4982940 | 213.3.1.1 ↗ | a+b three layers › Nat/Ivy › Uncharacterized conserved protein MK0968 › Uncharacterized conserved protein MK0968 › DUF424 | 0.61 | 41.0 | 3.30e-01 | 70.2% | 86.3% |
| 4446499 | 331.1.1.6 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 | 0.60 | 47.0 | 4.21e-01 | 100.0% | 81.2% |
| 4960065 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.60 | 47.0 | 3.11e-01 | 100.0% | 90.0% |
| 3493703 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.60 | 36.0 | 3.74e-01 | 97.9% | 62.2% |
| 4683204 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.60 | 41.0 | 3.24e-01 | 72.3% | 47.6% |
| 5066751 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.58 | 45.0 | 2.84e-01 | 100.0% | 67.9% |
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.56 | 43.0 | 2.98e-01 | 100.0% | 62.3% |
| 3222021 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.56 | 42.0 | 2.75e-01 | 87.2% | 45.3% |
| 4480662 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.55 | 43.0 | 2.75e-01 | 89.4% | 44.8% |
| 3802019 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.55 | 38.0 | 2.54e-01 | 74.5% | 63.7% |
| 3754643 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 41.0 | 2.75e-01 | 85.1% | 55.0% |
| 3792259 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 42.0 | 2.80e-01 | 89.4% | 49.5% |
| 5061177 | 213.3.1.1 ↗ | a+b three layers › Nat/Ivy › Uncharacterized conserved protein MK0968 › Uncharacterized conserved protein MK0968 › DUF424 | 0.54 | 40.0 | 3.26e-01 | 83.0% | 80.9% |
| 3455279 | 2003.1.2.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 | 0.52 | 38.0 | 2.81e-01 | 83.0% | 49.0% |
| 4058754 | 2003.1.5.38 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SAM_MT | 0.51 | 40.0 | 2.60e-01 | 93.6% | 29.4% |