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OQ921340.1__WIT26654.1__X__00062

Bact-Vir

OQ921340.1__WIT26654.1__X__00062

Identity

Accession:
OQ921340 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_SPO1L5

TaxID: 3053434

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-263
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e8cB03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.66 32.0 4.16e-01 86.8% 80.3%
2wmfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 57.0 5.15e-01 92.4% 82.6%
5v1qB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 55.0 5.27e-01 87.6% 83.2%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.65 55.0 5.31e-01 89.2% 91.9%
1ab5A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 30.0 4.16e-01 91.2% 85.6%
3clkB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 26.0 3.70e-01 90.8% 74.6%
2dh2A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 52.0 4.75e-01 84.0% 90.3%
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 53.0 4.92e-01 86.4% 78.5%
3ktsA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 45.0 5.08e-01 90.8% 95.1%
2vrkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 53.0 4.65e-01 88.4% 89.8%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 49.0 4.64e-01 88.4% 67.7%
2y2wC02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 53.0 4.62e-01 88.8% 90.2%
1uumA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 54.0 4.85e-01 92.4% 82.9%
3qllA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.62 48.0 5.17e-01 91.6% 93.0%
6ktqA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 52.0 4.98e-01 86.8% 89.0%
4acyA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 50.0 4.50e-01 83.6% 79.8%
3ijlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.62 49.0 5.11e-01 89.6% 89.5%
3a9iA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 53.0 5.20e-01 89.2% 92.8%
1tzzA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.61 49.0 4.93e-01 93.2% 81.6%
4pmxA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 52.0 4.85e-01 90.8% 94.1%
3nntA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 52.0 5.15e-01 92.0% 88.3%
1tkkA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.59 49.0 4.98e-01 89.6% 88.1%
2hk0A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 52.0 4.93e-01 93.6% 99.0%
1dl3B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 44.0 4.85e-01 91.6% 98.5%
2v0nA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 31.0 3.95e-01 88.8% 86.3%
3rptA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.58 48.0 4.85e-01 86.4% 87.4%
1sfjB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 49.0 5.13e-01 92.8% 96.6%
3khtA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 31.0 4.13e-01 98.0% 97.0%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 48.0 4.47e-01 87.2% 72.0%
6hcdD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 25.0 3.42e-01 86.8% 76.3%
4c6sA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.57 33.0 4.26e-01 78.4% 99.3%
1e43A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 49.0 4.69e-01 92.4% 96.9%
4kruA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 44.0 4.75e-01 94.8% 93.9%
4g2dA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 53.0 4.86e-01 99.6% 92.4%
3bf0C03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 36.0 4.36e-01 93.6% 95.8%
1cs1A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 35.0 3.57e-01 88.0% 61.2%
1ibjA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 34.0 3.51e-01 87.2% 60.7%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 4.71e-01 94.8% 93.8%
3aczA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 34.0 3.46e-01 87.2% 59.1%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 31.0 3.97e-01 78.4% 91.4%
1sulB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 4.66e-01 95.2% 100.0%
5tcgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 47.0 4.74e-01 90.8% 91.2%
4wfqA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 34.0 3.83e-01 90.4% 80.2%
2ekcB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 4.61e-01 91.2% 92.2%
5mn7A01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.54 32.0 3.85e-01 85.2% 87.9%
2p0oA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 46.0 4.72e-01 92.0% 97.4%
5cgaE00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 4.27e-01 83.6% 99.2%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 25.0 3.31e-01 79.6% 82.2%
1sfsA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 42.0 4.51e-01 88.8% 98.6%
3qkwB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 35.0 4.12e-01 77.2% 96.6%
3ea0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 4.43e-01 89.6% 90.4%
3ri6A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 35.0 3.71e-01 88.0% 72.3%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 22.0 3.02e-01 79.6% 76.0%
2r0qC01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.51 22.0 2.90e-01 76.8% 69.6%
3pvsB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 30.0 3.72e-01 87.2% 93.4%
1c3qA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 43.0 4.12e-01 89.2% 77.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050793 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 60.0 5.13e-01 91.2% 85.8%
4984856 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.68 56.0 5.67e-01 84.8% 97.2%
3855778 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.67 31.0 3.95e-01 90.8% 72.4%
4521555 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 54.0 5.54e-01 84.8% 97.1%
4050311 2002.1.1.37 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.66 47.0 5.06e-01 88.0% 84.2%
3260523 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 33.0 4.61e-01 75.6% 100.0%
3959015 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 27.0 3.97e-01 84.0% 86.4%
4664199 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.63 38.0 4.38e-01 95.2% 79.5%
5018056 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.63 29.0 3.83e-01 92.4% 76.4%
3602418 2002.1.1.28 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.63 48.0 5.07e-01 93.2% 88.2%
4391629 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 41.0 4.47e-01 86.0% 78.0%
4361571 2002.1.1.132 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE 0.62 51.0 4.72e-01 85.6% 77.5%
3232914 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.62 28.0 3.93e-01 85.6% 87.8%
3602450 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 53.0 4.98e-01 90.4% 90.0%
5011993 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.61 49.0 4.67e-01 89.2% 71.9%
4541617 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 54.0 5.38e-01 92.0% 98.0%
4974680 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.61 41.0 4.51e-01 91.2% 82.0%
3967165 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.61 52.0 4.79e-01 89.2% 77.8%
4031137 2007.19.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Glycerate kinase I (Pfam 02595) domain I › Glycerate kinase I (Pfam 02595) domain I › Gly_kinase 0.61 33.0 4.12e-01 90.4% 83.9%
4985340 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.60 35.0 4.16e-01 90.4% 82.3%
4933239 2007.1.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.59 28.0 3.86e-01 78.4% 85.2%
3812257 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.59 37.0 4.38e-01 86.4% 87.2%
4574284 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 40.0 4.17e-01 95.6% 72.3%
4104604 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.59 37.0 4.17e-01 91.2% 81.1%
4959838 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.59 36.0 4.11e-01 86.8% 79.5%
3939064 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.59 37.0 4.14e-01 95.2% 78.3%
3927433 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.58 51.0 4.13e-01 94.0% 88.3%
3299538 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.57 37.0 4.12e-01 90.8% 81.0%
3388919 2002.1.1.185 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_99 0.57 50.0 4.44e-01 94.4% 78.8%
2831694 2002.1.1.106 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.56 49.0 4.89e-01 92.0% 94.9%
4027084 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.56 35.0 4.04e-01 89.2% 83.2%
3599511 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.56 36.0 3.64e-01 90.8% 62.7%
3366498 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 34.0 4.17e-01 94.0% 95.5%
5080923 2007.1.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 0.56 27.0 3.41e-01 78.0% 75.3%
5071968 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 46.0 4.65e-01 88.4% 90.2%
5068507 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.54 37.0 4.15e-01 91.2% 86.5%
5061836 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.54 39.0 4.11e-01 86.4% 81.8%
4026092 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 37.0 4.16e-01 94.4% 87.5%
4975061 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 38.0 4.14e-01 90.4% 85.2%
4938531 247.1.1.30 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.53 30.0 3.65e-01 78.4% 83.6%
None — 0.53 44.0 3.95e-01 87.6% 88.1%
8883 2002.1.1.157 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Rv2525c_GlyHyd-like 0.53 42.0 4.50e-01 88.0% 98.1%
1874430 7512.1.1.78 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Gtf3_N 0.53 33.0 4.01e-01 70.4% 96.3%
3969396 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 4.40e-01 90.0% 85.2%
5013646 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.52 41.0 4.18e-01 90.4% 83.3%
4934724 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.52 29.0 3.80e-01 78.8% 95.2%
4995119 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.51 41.0 4.29e-01 90.4% 90.4%
5071253 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.51 29.0 3.84e-01 78.4% 99.3%
4947316 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.51 28.0 3.77e-01 79.6% 100.0%
5078790 2006.1.2.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.50 31.0 3.62e-01 83.2% 84.4%