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OQ921342.1__WIT27082.1__X__00095

Bact-Vir

OQ921342.1__WIT27082.1__X__00095

Identity

Accession:
OQ921342 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spbetavirus› Bacillus_phage_SPbetaL2

TaxID: 3053436

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: rep: MT325768.1__QJI52503.1__X__00206__D18-98
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 52.0 5.43e-01 90.6% 100.0%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 47.0 5.02e-01 81.2% 100.0%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 41.0 4.15e-01 91.8% 73.2%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.59 51.0 4.93e-01 95.3% 95.8%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 3.94e-01 90.6% 64.4%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 40.0 3.81e-01 90.6% 66.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 30.0 3.07e-01 100.0% 55.4%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.50 40.0 3.43e-01 89.4% 75.3%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.50 34.0 3.26e-01 87.1% 60.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039270 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 48.0 5.82e-01 82.4% 96.4%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.77 51.0 5.58e-01 87.1% 82.9%
4963571 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 50.0 5.66e-01 85.9% 87.7%
5016125 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 48.0 5.81e-01 83.5% 100.0%
3602933 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 52.0 5.92e-01 84.7% 95.4%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.68 46.0 5.41e-01 84.7% 100.0%
5002644 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.68 53.0 5.67e-01 84.7% 98.7%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.66 44.0 5.14e-01 81.2% 96.7%
3516152 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 51.0 5.17e-01 88.2% 98.8%
3398750 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 48.0 4.97e-01 84.7% 97.5%
5033307 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.61 50.0 4.27e-01 90.6% 98.6%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.58 52.0 4.81e-01 100.0% 88.1%
4937267 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.58 46.0 4.09e-01 85.9% 63.3%
3605594 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.57 42.0 3.67e-01 97.6% 50.8%
1872265 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.56 39.0 3.73e-01 89.4% 61.0%
3970821 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 41.0 3.88e-01 94.1% 63.8%
4600912 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 40.0 3.48e-01 90.6% 49.2%
4134860 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 39.0 3.36e-01 91.8% 45.7%
4029670 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 39.0 3.47e-01 91.8% 51.2%
3989019 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 40.0 3.69e-01 90.6% 60.9%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 28.0 3.13e-01 100.0% 68.8%
D2 high residues 88-153
PDB
Domain cluster: rep: aot2015-SM02_SRR1761699_Peru_trim_clean_trim_clean_scaffold_10_curated_closed_complete_start-adj_prodigal-single.1__X__X__00176__D18-73
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 50.0 5.31e-01 100.0% 87.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.23e-01 87.9% 66.1%
2ea3A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 39.0 3.67e-01 98.5% 47.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 46.0 4.22e-01 100.0% 61.4%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 3.89e-01 100.0% 48.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 48.0 4.32e-01 100.0% 60.9%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.61 54.0 4.36e-01 100.0% 76.0%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.00e-01 100.0% 57.1%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 4.00e-01 100.0% 55.0%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.59 50.0 4.73e-01 100.0% 77.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 41.0 3.78e-01 97.0% 56.3%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.79e-01 98.5% 61.2%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 48.0 4.04e-01 100.0% 54.1%
3v69B00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 40.0 3.43e-01 100.0% 44.6%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 42.0 3.72e-01 100.0% 54.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.56 42.0 3.95e-01 97.0% 65.8%
3k2yA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 4.19e-01 100.0% 93.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 50.0 4.06e-01 100.0% 88.8%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 48.0 3.10e-01 100.0% 40.3%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.98e-01 100.0% 86.8%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 47.0 4.03e-01 100.0% 90.7%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 46.0 3.89e-01 100.0% 83.8%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 3.56e-01 100.0% 72.4%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.52 42.0 3.61e-01 97.0% 84.6%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 40.0 3.49e-01 100.0% 53.2%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 39.0 3.31e-01 90.9% 87.1%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 41.0 3.41e-01 100.0% 50.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602932 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.73 51.0 5.71e-01 90.9% 100.0%
5034906 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.68 51.0 3.90e-01 100.0% 34.6%
5036802 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.68 51.0 3.95e-01 100.0% 37.1%
3517355 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.68 50.0 4.53e-01 100.0% 57.8%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 40.0 4.23e-01 80.3% 66.7%
4963592 1.1.8.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › PF26503 0.64 49.0 4.80e-01 100.0% 75.7%
2072038 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.63 57.0 4.93e-01 100.0% 93.1%
3944005 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.63 49.0 3.87e-01 98.5% 41.4%
4618288 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.63 53.0 5.01e-01 100.0% 75.9%
4164205 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.63 54.0 5.05e-01 100.0% 76.9%
3972102 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 52.0 4.50e-01 100.0% 59.0%
1725861 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.62 54.0 3.89e-01 100.0% 48.7%
3946118 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 46.0 4.47e-01 98.5% 70.7%
4519471 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 56.0 5.14e-01 100.0% 77.4%
3741028 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.61 53.0 4.54e-01 100.0% 60.0%
3226149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 3.99e-01 100.0% 48.7%
4039213 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 54.0 5.07e-01 100.0% 78.8%
3237442 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.33e-01 100.0% 59.0%
4402330 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 54.0 4.92e-01 100.0% 75.3%
4433958 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 54.0 4.90e-01 100.0% 75.3%
3838132 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 54.0 4.91e-01 100.0% 76.2%
4109849 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 54.0 4.90e-01 100.0% 75.3%
4178132 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 53.0 4.86e-01 100.0% 75.3%
4485646 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 54.0 4.91e-01 100.0% 76.5%
3519774 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 3.32e-01 83.3% 41.9%
4605381 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 53.0 4.86e-01 100.0% 76.2%
4174934 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 53.0 4.88e-01 100.0% 77.1%
3836865 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 52.0 4.32e-01 100.0% 56.5%
3788348 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.59 51.0 4.29e-01 100.0% 64.3%
3487595 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 53.0 4.19e-01 100.0% 52.3%
4027536 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 52.0 4.59e-01 100.0% 68.4%
4211588 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 47.0 2.85e-01 95.5% 12.7%
5043613 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.58 51.0 4.16e-01 100.0% 97.6%
3967347 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 39.0 3.78e-01 89.4% 64.0%
3789029 4186.1.1.0 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p 0.56 50.0 4.30e-01 100.0% 64.8%
3413627 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.56 50.0 4.24e-01 100.0% 60.9%
3988859 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.55 48.0 4.14e-01 100.0% 61.0%
138887 1.1.5.32 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.53 47.0 3.93e-01 100.0% 84.6%
4995639 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.52 36.0 3.48e-01 100.0% 62.5%
3194192 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.52 45.0 3.26e-01 100.0% 43.9%
4946558 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.62e-01 100.0% 67.2%
3936070 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 44.0 3.72e-01 100.0% 92.2%
3742847 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.50 43.0 3.17e-01 100.0% 46.3%