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OQ921345.1__WIT27691.1__X__00138

Bact-Vir

OQ921345.1__WIT27691.1__X__00138

Identity

Accession:
OQ921345 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-76
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.76 50.0 3.80e-01 81.2% 30.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.72 60.0 4.52e-01 93.8% 38.3%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 40.0 3.58e-01 73.4% 40.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.67 52.0 4.23e-01 93.8% 44.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.67 42.0 3.59e-01 71.9% 39.2%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 51.0 4.27e-01 85.9% 48.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.66 46.0 4.27e-01 71.9% 60.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.66 54.0 4.26e-01 95.3% 43.4%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 51.0 4.22e-01 85.9% 49.1%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 47.0 4.00e-01 81.2% 45.9%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.69e-01 73.4% 49.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 48.0 4.18e-01 85.9% 51.9%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.62e-01 90.6% 64.7%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 3.55e-01 87.5% 52.7%
1i99I02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 42.0 3.40e-01 73.4% 82.1%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.74e-01 84.4% 70.4%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.60 50.0 3.64e-01 93.8% 59.1%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 42.0 2.83e-01 76.6% 68.6%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 46.0 3.01e-01 87.5% 66.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.32e-01 76.6% 40.7%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.58 43.0 3.18e-01 81.2% 84.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.34e-01 84.4% 51.2%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.50e-01 90.6% 68.9%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.42e-01 73.4% 45.2%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 39.0 3.24e-01 75.0% 51.5%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 3.65e-01 90.6% 73.1%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 38.0 3.73e-01 73.4% 62.2%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.25e-01 81.2% 55.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.45e-01 73.4% 79.2%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 2.66e-01 73.4% 26.5%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.19e-01 81.2% 54.4%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.67e-01 82.8% 88.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.15e-01 81.2% 52.3%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.02e-01 92.2% 49.4%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.31e-01 92.2% 61.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 2.89e-01 87.5% 73.5%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.54 40.0 3.27e-01 79.7% 54.4%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.14e-01 81.2% 55.4%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 44.0 3.36e-01 90.6% 100.0%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.54 41.0 3.96e-01 82.8% 95.8%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.26e-01 73.4% 93.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 3.56e-01 96.9% 73.3%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.39e-01 85.9% 83.8%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.55e-01 96.9% 80.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.78e-01 95.3% 63.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.81 64.0 5.45e-01 90.6% 54.0%
5022726 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.80 56.0 6.21e-01 76.6% 92.0%
5052285 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 54.0 4.53e-01 75.0% 44.8%
3241305 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.77 60.0 4.55e-01 90.6% 37.9%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 51.0 4.81e-01 73.4% 60.0%
3796013 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.75 50.0 3.90e-01 73.4% 33.8%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.73 61.0 5.24e-01 95.3% 58.0%
3172576 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.73 64.0 5.28e-01 98.4% 55.7%
3181024 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.73 47.0 3.74e-01 76.6% 33.1%
5794 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.72 60.0 4.52e-01 93.8% 38.3%
3217638 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 44.0 4.18e-01 73.4% 53.3%
3591633 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.70 58.0 4.82e-01 93.8% 52.7%
3223154 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.69 53.0 4.10e-01 82.8% 45.7%
3718216 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.69 49.0 3.91e-01 75.0% 50.4%
3603448 3291.1.1.49 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › NFACT_N 0.68 50.0 3.65e-01 78.1% 60.6%
3598925 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.68 58.0 4.54e-01 93.8% 46.2%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 41.0 3.60e-01 73.4% 42.1%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 48.0 4.02e-01 82.8% 42.5%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 51.0 4.09e-01 84.4% 46.9%
4945347 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 46.0 3.63e-01 73.4% 36.2%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 51.0 3.84e-01 85.9% 37.0%
3864474 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 48.0 3.64e-01 81.2% 30.9%
4024735 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 43.0 4.22e-01 75.0% 61.4%
3893274 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 55.0 4.24e-01 95.3% 52.7%
5046931 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.65 46.0 3.10e-01 75.0% 19.6%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.65 39.0 4.02e-01 73.4% 63.3%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.65 53.0 4.18e-01 89.1% 50.0%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 3.95e-01 81.2% 46.4%
3764969 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.69e-01 73.4% 44.2%
5080980 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.63 52.0 4.29e-01 89.1% 100.0%
3408101 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 48.0 3.88e-01 85.9% 40.7%
4026643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 49.0 4.41e-01 82.8% 78.8%
3636596 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.47e-01 70.3% 86.0%
3893735 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 47.0 3.99e-01 85.9% 47.0%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 48.0 3.82e-01 85.9% 44.4%
402817 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 45.0 3.86e-01 81.2% 47.2%
4486857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 53.0 4.25e-01 100.0% 97.8%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 47.0 3.80e-01 85.9% 41.5%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.72e-01 75.0% 72.4%
3798524 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.61 47.0 3.97e-01 85.9% 48.7%
3705541 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 3.72e-01 75.0% 65.0%
3647918 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.61 48.0 3.90e-01 85.9% 71.7%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 41.0 4.03e-01 73.4% 64.3%
4985272 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 41.0 3.49e-01 70.3% 44.8%
4936961 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 44.0 4.10e-01 82.8% 65.9%
4123311 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.59 48.0 3.02e-01 95.3% 36.8%
3460917 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.59 45.0 3.96e-01 87.5% 61.9%
3911245 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.09e-01 92.2% 55.5%
5044375 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 51.0 3.42e-01 95.3% 26.0%
3577911 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.58 40.0 3.08e-01 73.4% 42.8%
4932637 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.58 40.0 3.63e-01 73.4% 55.6%
3614844 220.1.1.15 beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.57 39.0 3.08e-01 73.4% 44.3%
3588355 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.56 48.0 4.11e-01 92.2% 97.0%
3209160 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.56 42.0 3.06e-01 81.2% 28.7%
3658860 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.10e-01 87.5% 34.1%
5030187 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 42.0 3.94e-01 79.7% 76.9%
3590547 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 43.0 3.46e-01 84.4% 77.7%
3625974 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.55 38.0 3.46e-01 73.4% 71.1%
184719 3514.1.1.1 a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.54 40.0 3.27e-01 79.7% 54.4%
4968392 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 47.0 3.99e-01 93.8% 96.0%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 37.0 3.46e-01 73.4% 55.3%
3749345 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 36.0 3.46e-01 71.9% 58.7%
3531090 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.53 43.0 3.29e-01 95.3% 58.3%
4984691 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 41.0 3.43e-01 85.9% 77.5%
3937948 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.53 47.0 3.52e-01 96.9% 88.4%
4931879 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 37.0 3.26e-01 73.4% 48.0%
4930094 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 36.0 3.14e-01 73.4% 47.6%
3707085 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.52 45.0 3.09e-01 96.9% 77.7%
5041307 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.67e-01 84.4% 34.2%
4002646 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.81e-01 95.3% 88.8%