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OQ921347.1__WIT27973.1__X__00048

Bact-Vir

OQ921347.1__WIT27973.1__X__00048

Identity

Accession:
OQ921347 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Spbetavirus› Bacillus_phage_SPbetaL7

TaxID: 3053441

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-83
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23491.2 best bPH_8 83.0 1.40e-23 100.0% 67.1%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 44.0 2.91e-01 100.0% 16.7%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 38.0 3.58e-01 80.4% 47.0%
1vwxk00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 47.0 4.49e-01 100.0% 63.8%
4jpbW02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.66 48.0 4.29e-01 78.6% 86.1%
1bifA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.61 45.0 3.06e-01 80.4% 86.0%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 46.0 4.43e-01 100.0% 71.2%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 3.87e-01 80.4% 81.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 4.01e-01 100.0% 65.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 3.63e-01 96.4% 43.8%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 49.0 4.10e-01 98.2% 80.2%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 47.0 4.35e-01 100.0% 68.9%
3gm5A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 40.0 2.95e-01 71.4% 66.2%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 41.0 3.43e-01 78.6% 99.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 47.0 3.87e-01 100.0% 90.1%
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.26e-01 100.0% 73.6%
2p62A01 3.40.50.10620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains 0.55 37.0 2.85e-01 80.4% 27.7%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.71e-01 85.7% 73.5%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.68e-01 91.1% 37.1%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.54 39.0 3.33e-01 76.8% 93.8%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.54 43.0 3.77e-01 100.0% 56.7%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.54 35.0 3.48e-01 82.1% 61.0%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 3.65e-01 100.0% 71.1%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 46.0 4.19e-01 100.0% 72.4%
3dc4A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 39.0 2.52e-01 80.4% 28.5%
4r2xD00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 43.0 2.97e-01 100.0% 77.5%
4x83A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.61e-01 82.1% 63.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.92e-01 98.2% 93.3%
2id1A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 42.0 3.68e-01 100.0% 71.2%
1uz5A01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.52 42.0 3.24e-01 100.0% 86.1%
2o5aA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 43.0 3.69e-01 100.0% 72.5%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 42.0 2.84e-01 92.9% 59.8%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 41.0 2.86e-01 98.2% 95.2%
5fm5P00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.26e-01 82.1% 64.3%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 41.0 3.00e-01 98.2% 39.6%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 41.0 2.89e-01 100.0% 99.1%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 40.0 2.85e-01 100.0% 73.3%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.51 38.0 2.79e-01 80.4% 40.4%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 43.0 3.93e-01 96.4% 78.9%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.79e-01 98.2% 27.5%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.50 42.0 2.59e-01 100.0% 41.0%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.50 36.0 2.57e-01 82.1% 95.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4214812 4.8.1.26 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.99 95.0 7.89e-01 100.0% 63.6%
4648433 4.8.1.26 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.96 91.0 7.68e-01 100.0% 67.1%
4034423 4.8.1.26 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.88 80.0 6.84e-01 98.2% 69.4%
3902875 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.85 64.0 6.08e-01 100.0% 69.2%
4261008 220.1.1.290 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_5 0.80 72.0 5.82e-01 100.0% 70.5%
5017962 220.1.1.322 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.79 71.0 5.44e-01 100.0% 53.6%
5074128 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.79 57.0 5.45e-01 100.0% 66.2%
5048073 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.78 57.0 5.42e-01 100.0% 66.2%
4334411 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.76 55.0 5.25e-01 100.0% 66.2%
4943214 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.73 53.0 4.92e-01 100.0% 61.4%
3406523 316.1.1.6 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.73 43.0 2.86e-01 82.1% 15.0%
4990229 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.72 54.0 5.16e-01 100.0% 69.2%
4290509 4.8.1.23 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RemA-like 0.69 60.0 5.28e-01 100.0% 75.3%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 45.0 4.28e-01 100.0% 60.0%
5013290 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.65 46.0 3.16e-01 73.2% 51.7%
4360067 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.65 52.0 4.65e-01 100.0% 62.0%
4948172 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 46.0 3.89e-01 76.8% 75.8%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 45.0 3.60e-01 83.9% 100.0%
4153967 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 46.0 3.70e-01 83.9% 100.0%
5020410 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 51.0 3.90e-01 100.0% 53.8%
5063149 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 44.0 3.61e-01 82.1% 60.9%
3967712 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.60 49.0 3.66e-01 92.9% 81.4%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 43.0 3.41e-01 100.0% 37.0%
4240075 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.58 48.0 3.78e-01 100.0% 55.7%
3944244 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 44.0 3.52e-01 91.1% 97.0%
4029951 220.1.1.310 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.57 42.0 3.27e-01 100.0% 33.1%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.56 40.0 3.66e-01 100.0% 55.0%
3422262 3497.1.1.1 ↗ beta barrels › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › Replication foci-targeting sequence N-terminal domain › DNMT1-RFD 0.56 40.0 3.13e-01 87.5% 36.5%
1265583 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.56 43.0 3.47e-01 91.1% 92.9%
4983333 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.55 44.0 3.43e-01 98.2% 49.3%
2453401 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.54 34.0 3.22e-01 82.1% 47.8%
5053079 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.54 44.0 3.25e-01 98.2% 65.0%
4200435 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.54 43.0 3.18e-01 96.4% 58.9%
1406320 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.53 43.0 3.85e-01 100.0% 63.4%
4992739 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.53 43.0 3.33e-01 98.2% 49.3%
3476874 316.1.1.5 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS 0.53 41.0 3.50e-01 100.0% 65.0%
3949342 3739.1.1.1 ↗ beta sandwiches › TraO N-terminal domain › TraO N-terminal domain › TraO N-terminal domain › CagX 0.52 40.0 2.98e-01 82.1% 54.6%
5001037 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.51 39.0 3.15e-01 98.2% 48.7%
5001231 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 2.99e-01 100.0% 56.4%
3517704 2007.2.3.24 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561 0.51 42.0 2.59e-01 100.0% 83.0%
3700803 316.1.1.30 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase 0.51 38.0 2.81e-01 87.5% 80.6%
3288854 211.1.1.7 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.50 32.0 2.37e-01 78.6% 23.2%
4970369 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 37.0 3.44e-01 82.1% 62.9%
5025018 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.50 40.0 3.13e-01 100.0% 87.7%