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OQ921347.1__WIT28088.1__X__00164

Bact-Vir

OQ921347.1__WIT28088.1__X__00164

Identity

Accession:
OQ921347 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 50.0 3.66e-01 94.9% 65.0%
3tw6B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 51.0 2.95e-01 93.2% 10.2%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 43.0 3.88e-01 81.4% 91.8%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.53 39.0 3.23e-01 81.4% 72.6%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.60e-01 76.3% 75.0%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.98e-01 98.3% 96.2%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.78e-01 71.2% 91.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4661411 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 57.0 5.12e-01 100.0% 83.7%
3177431 101.1.1.94 alpha arrays › HTH › HTH › Three-helical HTH › Reb1_MybAD 0.63 55.0 5.24e-01 98.3% 87.1%
3214449 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.57 47.0 4.41e-01 100.0% 77.5%
3935505 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.53 46.0 4.09e-01 98.3% 84.7%
4947081 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.52 41.0 2.64e-01 94.9% 19.2%
4011529 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.44e-01 100.0% 45.6%
D2 high residues 70-125
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.62e-01 76.8% 70.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 50.0 4.34e-01 92.9% 80.6%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 46.0 3.29e-01 83.9% 77.4%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 52.0 4.09e-01 100.0% 84.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.32e-01 89.3% 78.3%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.76e-01 100.0% 52.5%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.59 50.0 3.92e-01 96.4% 96.8%
5jzxD02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 52.0 3.83e-01 100.0% 61.0%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 50.0 4.06e-01 100.0% 84.2%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 47.0 4.60e-01 98.2% 98.5%
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 50.0 3.93e-01 100.0% 70.9%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.45e-01 83.9% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 47.0 4.02e-01 100.0% 74.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 43.0 3.43e-01 83.9% 58.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.56 41.0 3.14e-01 80.4% 61.7%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 2.85e-01 100.0% 25.8%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.56 44.0 4.04e-01 91.1% 87.0%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 46.0 4.07e-01 100.0% 95.6%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.55 45.0 2.89e-01 91.1% 18.2%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.02e-01 76.8% 60.3%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 37.0 2.90e-01 71.4% 71.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.84e-01 92.9% 76.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 46.0 3.95e-01 100.0% 92.9%
5xctB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.70e-01 98.2% 81.2%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.55 42.0 3.29e-01 83.9% 58.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.28e-01 89.3% 44.8%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.54 43.0 3.72e-01 100.0% 79.2%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 46.0 4.11e-01 98.2% 72.3%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.54e-01 92.9% 63.2%
1y7eA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.54 43.0 3.59e-01 100.0% 97.5%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 45.0 3.29e-01 100.0% 47.7%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 41.0 4.31e-01 80.4% 93.9%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 40.0 4.04e-01 80.4% 94.5%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.05e-01 89.3% 92.3%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.67e-01 96.4% 13.6%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.53 37.0 2.57e-01 78.6% 19.8%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 43.0 3.47e-01 98.2% 76.6%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 41.0 4.11e-01 92.9% 98.3%
2druA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.53e-01 94.6% 84.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.16e-01 92.9% 96.6%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 40.0 3.64e-01 83.9% 74.7%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.61e-01 100.0% 97.1%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.05e-01 94.6% 40.8%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 41.0 3.52e-01 96.4% 85.3%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.51 43.0 2.77e-01 100.0% 26.4%
3g1nA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.51 39.0 3.51e-01 85.7% 70.0%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.16e-01 87.5% 49.2%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 35.0 2.76e-01 75.0% 80.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3778556 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.71 48.0 3.37e-01 71.4% 62.8%
3538582 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 48.0 3.35e-01 73.2% 64.4%
3503537 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.68 47.0 3.90e-01 73.2% 40.8%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 57.0 5.45e-01 96.4% 95.4%
3824515 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.64 55.0 4.61e-01 100.0% 69.0%
3691410 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.18e-01 98.2% 98.5%
3270749 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.62 49.0 4.44e-01 89.3% 91.3%
5052150 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 44.0 4.51e-01 75.0% 92.7%
3878278 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.45e-01 82.1% 71.3%
3597224 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.78e-01 87.5% 75.2%
4953535 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.61 46.0 3.68e-01 98.2% 39.2%
5015298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 43.0 4.51e-01 75.0% 86.0%
3713588 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.36e-01 96.4% 100.0%
3592077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 3.87e-01 100.0% 100.0%
3432172 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.43e-01 75.0% 94.0%
3607261 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.45e-01 75.0% 91.1%
4220178 2.1.1.228 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind 0.57 39.0 2.64e-01 76.8% 17.4%
4003887 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.57 48.0 4.04e-01 96.4% 69.0%
3612351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.12e-01 87.5% 96.0%
3598347 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.38e-01 73.2% 95.6%
3594031 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.98e-01 73.2% 85.5%
3604642 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.34e-01 75.0% 97.8%
3440667 1.1.2.8 beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.56 45.0 4.30e-01 87.5% 98.5%
3507461 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 42.0 4.28e-01 80.4% 92.7%
4286118 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.56 44.0 2.80e-01 89.3% 18.7%
4930203 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.56 42.0 4.29e-01 80.4% 90.9%
4971396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.26e-01 80.4% 90.9%
3898196 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 4.01e-01 73.2% 98.2%
4409502 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 45.0 3.69e-01 94.6% 65.5%
4342241 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 43.0 2.68e-01 89.3% 15.4%
3945331 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.54 41.0 2.78e-01 94.6% 18.5%
5059852 375.1.2.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.54 35.0 3.85e-01 71.4% 92.5%
3881277 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.60e-01 91.1% 74.0%
3601859 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 3.87e-01 80.4% 95.4%
3167534 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 3.69e-01 80.4% 96.0%
4936454 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.54 40.0 4.11e-01 80.4% 87.3%
3932150 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 39.0 3.58e-01 78.6% 66.7%
3890907 10.12.1.101 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.54 43.0 2.72e-01 89.3% 30.0%
5026915 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 4.12e-01 80.4% 94.0%
5012898 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.87e-01 82.1% 86.7%
3267249 11.1.1.801 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 0.53 41.0 3.08e-01 87.5% 62.7%
4953373 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 36.0 2.83e-01 73.2% 76.7%
2642985 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.51 41.0 3.74e-01 98.2% 100.0%
4941241 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 4.00e-01 82.1% 94.0%
5029364 5061.1.1.1 alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.51 41.0 2.45e-01 92.9% 94.1%
4521524 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 34.0 2.68e-01 71.4% 72.1%
3472004 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 3.54e-01 100.0% 75.7%
3994540 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 43.0 2.74e-01 98.2% 24.2%
4189117 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.97e-01 80.4% 94.0%
3485798 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.17e-01 98.2% 65.3%
3327182 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.50 40.0 3.67e-01 98.2% 100.0%
3268480 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 3.09e-01 100.0% 63.7%
4510354 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.50 42.0 2.69e-01 100.0% 45.5%