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OQ921348.1__WIT28134.1__X__00026

Bact-Vir

OQ921348.1__WIT28134.1__X__00026

Identity

Accession:
OQ921348 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26892.1 best Phage_SPbeta_YosX 112.4 2.00e-32 100.0% 53.0%
D2 medium residues 63-117
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26892.1 best Phage_SPbeta_YosX 104.3 6.30e-30 100.0% 47.0%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.71 54.0 4.98e-01 83.6% 100.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 4.42e-01 100.0% 50.4%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.66 40.0 3.88e-01 96.4% 55.0%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 45.0 3.12e-01 72.7% 32.5%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.25e-01 100.0% 50.0%
1xfjA00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.65 52.0 3.39e-01 90.9% 20.7%
1rv9A00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.65 51.0 3.36e-01 87.3% 21.9%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.16e-01 100.0% 51.1%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.62 42.0 3.63e-01 70.9% 47.8%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.47e-01 100.0% 70.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 3.89e-01 100.0% 43.0%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 50.0 3.38e-01 98.2% 41.3%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 4.60e-01 100.0% 85.6%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 3.31e-01 100.0% 23.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.33e-01 96.4% 67.4%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 54.0 3.72e-01 100.0% 54.5%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.92e-01 100.0% 53.2%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.31e-01 94.5% 87.8%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 49.0 3.85e-01 90.9% 79.6%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.59 44.0 4.34e-01 83.6% 78.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.38e-01 100.0% 79.5%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 44.0 4.13e-01 89.1% 93.4%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.59 50.0 3.52e-01 96.4% 98.9%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.72e-01 100.0% 45.4%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.90e-01 100.0% 47.5%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.26e-01 100.0% 82.8%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.57 38.0 3.63e-01 81.8% 56.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.93e-01 100.0% 69.5%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.69e-01 87.3% 55.6%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 43.0 3.83e-01 92.7% 94.4%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.78e-01 78.2% 77.9%
2wa0A02 1.10.10.1210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH2 motif 0.55 43.0 3.61e-01 94.5% 69.9%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.87e-01 81.8% 92.2%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 39.0 3.44e-01 76.4% 63.2%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.54e-01 100.0% 46.3%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.54 37.0 3.73e-01 76.4% 89.8%
6dftJ00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.54 45.0 2.82e-01 100.0% 16.5%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.53e-01 90.9% 70.9%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.11e-01 100.0% 74.1%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.44e-01 100.0% 50.7%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.72e-01 87.3% 71.8%
2q88A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 41.0 3.10e-01 81.8% 85.0%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 44.0 3.27e-01 100.0% 35.1%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.32e-01 76.4% 76.7%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.70e-01 94.5% 71.9%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 41.0 3.85e-01 92.7% 78.1%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 40.0 3.21e-01 89.1% 56.3%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.87e-01 89.1% 95.5%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 38.0 2.40e-01 76.4% 16.0%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 39.0 3.70e-01 89.1% 91.7%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.52 44.0 2.93e-01 94.5% 26.9%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.27e-01 81.8% 64.3%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 40.0 3.70e-01 100.0% 95.3%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.24e-01 83.6% 65.3%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.55e-01 87.3% 81.8%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 40.0 3.24e-01 89.1% 91.4%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.34e-01 76.4% 76.7%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.50 35.0 2.51e-01 78.2% 95.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393979 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.72 65.0 5.11e-01 100.0% 68.2%
3388475 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.69 47.0 2.65e-01 72.7% 6.3%
3948722 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 56.0 4.73e-01 100.0% 72.6%
5031879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.65e-01 100.0% 66.3%
3671688 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.48e-01 80.0% 77.1%
7917 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.65 51.0 3.36e-01 87.3% 21.9%
4102454 288.1.1.1 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 0.65 50.0 3.29e-01 87.3% 20.8%
5071075 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 55.0 4.84e-01 100.0% 77.6%
4928632 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.64 48.0 4.39e-01 83.6% 77.3%
3981526 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.63 50.0 4.32e-01 87.3% 70.6%
4979152 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.62 51.0 4.39e-01 98.2% 66.3%
5044919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.59e-01 92.7% 82.2%
5024114 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.62 53.0 4.01e-01 100.0% 45.0%
5073893 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.23e-01 89.1% 72.9%
4991639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.16e-01 83.6% 68.8%
2613 101.1.2.105 alpha arrays › HTH › HTH › winged helix domain › MotA_activ 0.61 51.0 4.33e-01 96.4% 67.4%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.68e-01 90.9% 60.0%
3627622 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.61 53.0 2.97e-01 100.0% 9.4%
4371313 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 45.0 3.95e-01 87.3% 67.4%
4938492 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.43e-01 96.4% 76.2%
5048731 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.60 49.0 4.25e-01 98.2% 65.3%
3282607 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 3.97e-01 100.0% 53.6%
4993477 2003.1.4.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › DS 0.60 50.0 3.74e-01 94.5% 62.8%
5020992 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.60 49.0 4.08e-01 100.0% 60.0%
5052967 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.31e-01 89.1% 31.4%
3231718 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.60 52.0 2.91e-01 98.2% 40.0%
334009 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 48.0 3.80e-01 100.0% 47.8%
1722503 101.1.2.129 alpha arrays › HTH › HTH › winged helix domain › BpuJI_N 0.59 43.0 3.41e-01 80.0% 53.1%
3284225 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 49.0 4.43e-01 100.0% 83.7%
5048676 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.59 46.0 3.91e-01 90.9% 59.0%
5050370 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 46.0 3.20e-01 90.9% 28.1%
4029355 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.58 48.0 4.05e-01 100.0% 71.4%
4962050 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.58 48.0 3.95e-01 100.0% 62.6%
3279254 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 4.00e-01 89.1% 67.1%
3787647 192.2.1.31 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.57 42.0 3.50e-01 80.0% 79.0%
4947375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.93e-01 87.3% 72.5%
5063559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.09e-01 90.9% 81.3%
5035389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.72e-01 83.6% 76.5%
3997738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.02e-01 92.7% 68.2%
5068813 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.54e-01 83.6% 65.0%
4990500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.91e-01 94.5% 73.3%
3984604 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.56 44.0 3.76e-01 89.1% 85.3%
4997786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.93e-01 92.7% 76.5%
3939429 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.55 48.0 2.74e-01 100.0% 95.9%
4928588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.65e-01 100.0% 54.2%
3574242 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.55 48.0 2.66e-01 100.0% 13.1%
5081885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.82e-01 89.1% 77.5%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.54 40.0 3.58e-01 87.3% 68.9%
5006382 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 47.0 2.92e-01 96.4% 88.6%
3741065 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.38e-01 81.8% 67.4%
5075915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.58e-01 89.1% 74.1%
5072661 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.58e-01 83.6% 73.8%
5003768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.69e-01 87.3% 74.7%
3933656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.30e-01 92.7% 56.0%
4940097 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 37.0 3.57e-01 81.8% 71.4%
4601931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.62e-01 100.0% 71.0%