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OQ921398.1__WIC39313.1__vFB297_1060__00106
Bact-VirOQ921398.1__WIC39313.1__vFB297_1060__00106
Identity
- Accession:
- OQ921398 ↗
- Kingdom:
- phage
Quality
67.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Pakpunavirus›
Pseudomonas_phage_vFB297
TaxID: 3049963
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a2eA00 | 3.30.430.20 | Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif | 0.61 | 42.0 | 3.79e-01 | 72.4% | 88.0% |
| 6lsvA01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.61 | 51.0 | 3.37e-01 | 93.4% | 54.8% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.56 | 43.0 | 4.09e-01 | 89.5% | 70.7% |
| 4iiwA01 | 3.30.1490.480 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase | 0.53 | 38.0 | 3.88e-01 | 88.2% | 77.6% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 43.0 | 4.16e-01 | 100.0% | 80.5% |
| 1u0mA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 44.0 | 3.33e-01 | 97.4% | 61.4% |
| 3v7nA01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.52 | 38.0 | 3.53e-01 | 77.6% | 75.8% |
| 2fz0A00 | 3.30.450.230 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Vacuolar R-SNARE Nyv1, longin domain | 0.51 | 45.0 | 3.67e-01 | 100.0% | 83.9% |
| 1l7qA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 44.0 | 3.07e-01 | 100.0% | 29.3% |
| 1r88A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.73e-01 | 84.2% | 47.6% |
| 4w9rB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.04e-01 | 100.0% | 94.0% |
| 1f0nA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.02e-01 | 100.0% | 93.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4320117 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.70 | 47.0 | 4.47e-01 | 80.3% | 59.1% |
| 3635557 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.63 | 43.0 | 4.75e-01 | 98.7% | 90.0% |
| 4182238 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.62 | 47.0 | 4.51e-01 | 80.3% | 91.8% |
| 3707908 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 47.0 | 4.26e-01 | 88.2% | 70.9% |
| 4587247 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 41.0 | 3.96e-01 | 100.0% | 68.9% |
| 3600748 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.54 | 42.0 | 2.91e-01 | 84.2% | 44.7% |
| 5030231 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 4.11e-01 | 98.7% | 82.5% |
| 4321923 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.53 | 43.0 | 3.78e-01 | 89.5% | 82.6% |
| 4941003 | 329.1.1.2 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 | 0.53 | 42.0 | 3.78e-01 | 93.4% | 60.9% |
| None | — | 0.53 | 45.0 | 3.26e-01 | 100.0% | 87.2% | |
| 3859640 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 41.0 | 3.02e-01 | 81.6% | 68.9% |
| 4979876 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.52 | 42.0 | 2.97e-01 | 88.2% | 95.5% |
| 5018190 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.52 | 41.0 | 3.20e-01 | 84.2% | 72.5% |
| 3839405 | 2008.1.1.161 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7149 | 0.52 | 44.0 | 3.37e-01 | 100.0% | 60.5% |
| 5081934 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 3.25e-01 | 88.2% | 50.6% |
| 3666767 | 101.15.1.10 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP | 0.51 | 43.0 | 3.94e-01 | 96.1% | 96.2% |
| 3679146 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.51 | 42.0 | 3.69e-01 | 96.1% | 83.2% |
| 3386937 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.50 | 40.0 | 2.86e-01 | 86.8% | 50.7% |
| 4399451 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 40.0 | 3.80e-01 | 100.0% | 72.6% |