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OQ921725.1__WGV35960.1__SEA_FRANKENWEENIE_288__00273

Bact-Vir

OQ921725.1__WGV35960.1__SEA_FRANKENWEENIE_288__00273

Identity

Accession:
OQ921725 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_Frankenweenie

TaxID: 2969429

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 51.0 3.17e-01 78.9% 27.3%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 40.0 4.67e-01 78.9% 94.1%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 50.0 3.20e-01 78.9% 36.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 49.0 3.08e-01 77.2% 25.6%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 51.0 3.21e-01 84.2% 100.0%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 52.0 3.61e-01 86.0% 78.1%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 51.0 3.22e-01 86.0% 100.0%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 49.0 3.11e-01 84.2% 100.0%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 40.0 3.65e-01 77.2% 46.2%
1u0tA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.64 45.0 3.39e-01 73.7% 94.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.50e-01 100.0% 76.4%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 50.0 2.93e-01 86.0% 92.7%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 4.19e-01 94.7% 94.1%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.03e-01 89.5% 79.2%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.61 37.0 3.54e-01 82.5% 50.0%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 49.0 3.17e-01 89.5% 68.5%
3dmeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 3.23e-01 86.0% 85.9%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.09e-01 86.0% 69.4%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.39e-01 93.0% 88.7%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 41.0 4.14e-01 82.5% 70.7%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 42.0 4.18e-01 96.5% 74.1%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 4.07e-01 100.0% 96.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.18e-01 91.2% 80.0%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 3.24e-01 93.0% 29.4%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.19e-01 94.7% 32.4%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 43.0 3.38e-01 91.2% 34.3%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.92e-01 100.0% 58.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 50.0 3.37e-01 100.0% 39.5%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 4.05e-01 100.0% 87.7%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.16e-01 100.0% 31.6%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.03e-01 100.0% 26.6%
4umwA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 48.0 3.89e-01 98.2% 78.4%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.16e-01 100.0% 27.7%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.92e-01 100.0% 94.9%
5x1yA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.79e-01 100.0% 96.7%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 45.0 3.27e-01 93.0% 32.1%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 48.0 4.34e-01 100.0% 71.2%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 43.0 3.04e-01 91.2% 57.5%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 43.0 3.26e-01 94.7% 39.2%
1d0cA02 3.90.440.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 › Nitric Oxide Synthase;Heme Domain;Chain A domain 2 0.54 37.0 3.10e-01 73.7% 93.2%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.53 43.0 3.27e-01 93.0% 93.8%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 4.11e-01 93.0% 85.1%
2bjnB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.51 41.0 3.18e-01 96.5% 60.8%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.51 35.0 3.43e-01 91.2% 65.2%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.50 38.0 2.80e-01 93.0% 36.7%
4oagB02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.50 43.0 3.06e-01 98.2% 79.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3683195 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.68 50.0 2.95e-01 100.0% 10.1%
4494953 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.68 47.0 3.61e-01 100.0% 32.3%
3972260 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 57.0 4.59e-01 94.7% 98.2%
3917082 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.66 52.0 3.21e-01 87.7% 98.3%
None — 0.66 52.0 3.20e-01 87.7% 98.3%
3988005 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 47.0 4.91e-01 100.0% 86.0%
4431788 243.4.1.1 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.65 46.0 4.20e-01 100.0% 56.0%
3193252 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.65 52.0 3.31e-01 86.0% 59.0%
142886 2003.1.2.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.63 50.0 3.92e-01 86.0% 87.5%
2800606 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.63 43.0 3.92e-01 73.7% 88.9%
3291190 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 49.0 3.19e-01 86.0% 61.9%
4927970 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 49.0 3.71e-01 84.2% 92.5%
5062937 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.63 51.0 4.22e-01 94.7% 72.7%
4027850 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.62 51.0 3.07e-01 91.2% 81.8%
4601386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.70e-01 91.2% 88.0%
2156991 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 47.0 2.93e-01 84.2% 81.4%
4016568 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 49.0 2.94e-01 89.5% 87.4%
4944767 101.1.2.883 ↗ alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.61 36.0 3.32e-01 73.7% 42.7%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.87e-01 100.0% 84.0%
4187800 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.61 41.0 4.07e-01 100.0% 66.7%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.05e-01 100.0% 49.6%
3291448 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 3.46e-01 77.2% 43.3%
3728847 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 50.0 2.97e-01 89.5% 70.2%
3602921 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.11e-01 100.0% 70.9%
3576662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.14e-01 93.0% 21.0%
3704808 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.15e-01 100.0% 22.2%
3722079 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 49.0 3.00e-01 93.0% 85.9%
3291369 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.59 48.0 3.11e-01 89.5% 72.8%
3694501 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.59 48.0 3.27e-01 91.2% 80.5%
3290600 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 51.0 3.22e-01 98.2% 27.1%
3601847 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 48.0 3.74e-01 96.5% 40.6%
3645592 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.59 48.0 4.15e-01 96.5% 81.0%
3450480 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.59 50.0 3.32e-01 100.0% 22.4%
3211396 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.59 52.0 3.18e-01 100.0% 16.9%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.59 45.0 4.33e-01 82.5% 78.5%
None — 0.59 51.0 3.24e-01 98.2% 34.0%
3973145 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 43.0 4.35e-01 77.2% 87.3%
None — 0.58 51.0 3.16e-01 100.0% 16.9%
1179390 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 43.0 3.41e-01 91.2% 35.4%
4188723 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 51.0 3.22e-01 98.2% 32.9%
3694574 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.58 50.0 2.96e-01 100.0% 28.3%
3622714 5.1.5.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.58 50.0 3.13e-01 100.0% 16.9%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.58 49.0 4.21e-01 100.0% 81.0%
4453931 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.57 35.0 3.49e-01 80.7% 56.7%
9248 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.57 48.0 3.93e-01 100.0% 95.7%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 40.0 4.12e-01 96.5% 78.2%
4948694 2003.1.1.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AdoHcyase_NAD 0.56 45.0 3.40e-01 93.0% 35.4%
3573553 535.1.1.1 ↗ alpha arrays › BEACH domain › BEACH domain › BEACH domain › Beach 0.56 48.0 2.86e-01 98.2% 23.9%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.56 42.0 4.08e-01 82.5% 76.9%
3504014 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 3.01e-01 98.2% 32.5%
3268906 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 47.0 4.08e-01 96.5% 64.0%
3990001 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 41.0 4.21e-01 78.9% 84.9%
3242312 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 41.0 2.77e-01 91.2% 25.5%
461696 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 44.0 3.28e-01 93.0% 73.9%
3574387 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 2.98e-01 100.0% 32.9%
3444546 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.92e-01 96.5% 30.7%
3512689 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.54 44.0 2.79e-01 96.5% 20.8%
4655659 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.96e-01 100.0% 71.1%
3167702 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 46.0 2.79e-01 100.0% 27.3%
5022512 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 42.0 3.13e-01 94.7% 61.3%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.51 37.0 3.65e-01 82.5% 76.9%
3924553 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.51 33.0 2.89e-01 93.0% 41.1%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.50 36.0 3.58e-01 82.5% 76.9%