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OQ927978.1__WKV23600.1__SEA1_gp0252__00252
Bact-VirOQ927978.1__WKV23600.1__SEA1_gp0252__00252
Identity
- Accession:
- OQ927978 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Gelderlandvirus›
Salmonella_phage_SEA1
TaxID: 3061287
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-53
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q7nA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 4.36e-01 | 96.2% | 85.1% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.63 | 53.0 | 4.10e-01 | 100.0% | 78.9% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 55.0 | 3.63e-01 | 100.0% | 24.9% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 43.0 | 3.67e-01 | 100.0% | 44.7% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 52.0 | 3.83e-01 | 100.0% | 36.5% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 50.0 | 3.97e-01 | 100.0% | 96.7% |
| 2furB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 53.0 | 3.57e-01 | 100.0% | 26.8% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 51.0 | 3.87e-01 | 100.0% | 39.7% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.83e-01 | 78.8% | 51.3% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 52.0 | 3.94e-01 | 100.0% | 41.1% |
| 2htiA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 52.0 | 3.92e-01 | 100.0% | 40.5% |
| 2hsiA01 | 2.60.40.1590 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains | 0.59 | 45.0 | 3.97e-01 | 86.5% | 85.4% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 53.0 | 3.69e-01 | 100.0% | 32.7% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 52.0 | 3.45e-01 | 100.0% | 25.6% |
| 8bxrA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.78e-01 | 88.5% | 81.1% |
| 1g0dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.63e-01 | 100.0% | 73.0% |
| 1havB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 51.0 | 4.04e-01 | 100.0% | 62.1% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 48.0 | 3.75e-01 | 98.1% | 57.4% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 49.0 | 3.92e-01 | 100.0% | 66.7% |
| 1h6uA03 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 3.62e-01 | 96.2% | 67.0% |
| 4nn5C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.45e-01 | 86.5% | 81.8% |
| 3regA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 2.86e-01 | 84.6% | 26.3% |
| 5uv6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.62e-01 | 92.3% | 93.5% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.52 | 40.0 | 3.52e-01 | 86.5% | 90.4% |
| 4tw1B00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.52 | 42.0 | 2.78e-01 | 98.1% | 72.3% |
| 6hciB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.47e-01 | 94.2% | 81.8% |
| 5j11C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.04e-01 | 78.8% | 37.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 42.0 | 3.54e-01 | 100.0% | 53.3% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 40.0 | 2.62e-01 | 92.3% | 77.7% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 42.0 | 3.60e-01 | 100.0% | 80.9% |
| 2wp3O00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.44e-01 | 94.2% | 82.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3419617 | 304.9.1.85 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28947 | 0.65 | 54.0 | 4.64e-01 | 100.0% | 94.4% |
| 1695162 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.62 | 56.0 | 3.62e-01 | 100.0% | 23.8% |
| 3613893 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.62 | 51.0 | 4.21e-01 | 100.0% | 50.0% |
| 4998991 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.61 | 54.0 | 3.91e-01 | 100.0% | 36.4% |
| 5062740 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.61 | 53.0 | 3.59e-01 | 100.0% | 27.0% |
| 67 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.61 | 53.0 | 3.56e-01 | 100.0% | 26.4% |
| 4125768 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.61 | 52.0 | 3.71e-01 | 100.0% | 33.3% |
| 4926888 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.61 | 53.0 | 3.94e-01 | 100.0% | 39.2% |
| 5071939 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.60 | 46.0 | 3.34e-01 | 86.5% | 61.6% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.60 | 52.0 | 3.86e-01 | 100.0% | 39.2% |
| 3899239 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.59 | 46.0 | 3.89e-01 | 100.0% | 50.0% |
| 1148147 | 11.1.1.266 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M23_N | 0.59 | 45.0 | 3.97e-01 | 86.5% | 86.4% |
| 3223922 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.58 | 47.0 | 3.93e-01 | 100.0% | 50.5% |
| 4960378 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.58 | 50.0 | 3.63e-01 | 100.0% | 35.2% |
| 3691310 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.57 | 47.0 | 3.52e-01 | 100.0% | 37.6% |
| 3297907 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.57 | 46.0 | 3.93e-01 | 100.0% | 97.0% |
| 3176015 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.56 | 44.0 | 4.50e-01 | 98.1% | 100.0% |
| 3392283 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 42.0 | 3.42e-01 | 92.3% | 82.6% |
| 3851268 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.54 | 44.0 | 3.72e-01 | 96.2% | 81.1% |
| 3311207 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.53 | 38.0 | 2.65e-01 | 82.7% | 64.7% |
| 3200064 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.53 | 46.0 | 3.51e-01 | 100.0% | 47.2% |
| 3790807 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 44.0 | 3.92e-01 | 100.0% | 90.0% |
| 5030436 | 4111.1.1.0 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like | 0.52 | 46.0 | 3.55e-01 | 100.0% | 49.6% |
| 3499895 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.52 | 39.0 | 3.41e-01 | 90.4% | 92.6% |
| 4088621 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.52 | 40.0 | 3.25e-01 | 100.0% | 42.9% |
| 4962604 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.51 | 44.0 | 4.13e-01 | 100.0% | 93.8% |
| 3498562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 40.0 | 3.47e-01 | 94.2% | 93.7% |
| 3493294 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 45.0 | 3.26e-01 | 100.0% | 51.7% |