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OQ938575.1__WIC88820.1__SEA_ONIONKNIGHT_13__00013

Bact-Vir

OQ938575.1__WIC88820.1__SEA_ONIONKNIGHT_13__00013

Identity

Accession:
OQ938575 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_OnionKnight

TaxID: 3049362

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.58 41.0 3.13e-01 74.4% 96.4%
3smzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.89e-01 93.6% 85.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 32.0 3.54e-01 97.4% 76.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 25.0 2.71e-01 75.6% 50.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 39.0 3.02e-01 83.3% 77.7%
4agrB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.23e-01 83.3% 68.8%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.50 29.0 2.66e-01 83.3% 42.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030227 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.70 34.0 3.99e-01 85.9% 65.5%
4995512 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.68 38.0 4.27e-01 83.3% 71.7%
2389474 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.65 35.0 3.95e-01 84.6% 69.5%
3230791 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 40.0 3.66e-01 83.3% 48.0%
5044773 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.64 33.0 3.96e-01 83.3% 76.0%
3501741 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 31.0 3.54e-01 92.3% 65.0%
3998685 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 28.0 2.78e-01 71.8% 42.4%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 29.0 3.43e-01 92.3% 66.0%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.58 34.0 3.29e-01 83.3% 50.5%
3650212 4.1.1.190 ↗ beta barrels › SH3 › SH3 › SH3 › Transposase_23 0.58 30.0 2.83e-01 93.6% 38.0%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.56 34.0 2.86e-01 82.1% 36.2%
4621323 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 42.0 4.04e-01 80.8% 95.6%
3076016 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.55 40.0 3.50e-01 83.3% 51.7%
3526347 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 38.0 2.79e-01 83.3% 87.2%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 30.0 2.89e-01 82.1% 48.9%
3291157 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.50 38.0 3.20e-01 83.3% 90.0%
3393347 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 30.0 2.88e-01 79.5% 50.0%