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OQ938575.1__WIC88847.1__SEA_ONIONKNIGHT_41__00041

Bact-Vir

OQ938575.1__WIC88847.1__SEA_ONIONKNIGHT_41__00041

Identity

Accession:
OQ938575 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-96
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8300 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 61.0 4.91e-01 71.2% 84.8%
1hyoA01 2.30.30.230 Mainly Beta › Roll › SH3 type barrels. › Fumarylacetoacetase, N-terminal domain 0.75 56.0 4.34e-01 80.8% 88.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.59e-01 80.8% 66.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.04e-01 80.8% 83.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 48.0 3.82e-01 76.9% 39.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.65 49.0 3.26e-01 80.8% 46.6%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.65e-01 80.8% 80.0%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 42.0 4.46e-01 73.1% 86.0%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 45.0 3.65e-01 78.8% 84.2%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 49.0 3.09e-01 90.4% 73.4%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.18e-01 78.8% 83.3%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.18e-01 100.0% 32.5%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 3.92e-01 100.0% 71.2%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.51e-01 100.0% 80.0%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.43e-01 80.8% 78.7%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.58 41.0 4.00e-01 78.8% 88.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.01e-01 100.0% 90.1%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.01e-01 100.0% 32.2%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.49e-01 78.8% 97.9%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.53e-01 78.8% 23.2%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.57 42.0 3.32e-01 80.8% 55.4%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 46.0 3.61e-01 100.0% 62.7%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.20e-01 80.8% 70.4%
1qxfA00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.56 39.0 3.78e-01 73.1% 77.6%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 3.97e-01 100.0% 67.0%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.56 34.0 3.01e-01 82.7% 38.3%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.55 45.0 2.62e-01 100.0% 32.9%
2xzm600 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.55 38.0 3.35e-01 73.1% 57.5%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 44.0 3.35e-01 100.0% 77.0%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 38.0 3.14e-01 75.0% 78.5%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 38.0 3.13e-01 80.8% 82.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.14e-01 80.8% 74.4%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.53 38.0 3.16e-01 80.8% 58.9%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 43.0 4.11e-01 90.4% 80.6%
3c8dB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 39.0 2.56e-01 78.8% 38.2%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.31e-01 80.8% 67.8%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 37.0 3.19e-01 78.8% 53.5%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 2.90e-01 78.8% 33.1%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.52 43.0 3.26e-01 100.0% 59.7%
4efoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.45e-01 88.5% 88.8%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.58e-01 98.1% 37.9%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.50 39.0 2.68e-01 90.4% 96.1%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.44e-01 98.1% 81.7%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 36.0 2.80e-01 84.6% 86.5%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 34.0 2.84e-01 75.0% 43.9%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.72e-01 76.9% 29.9%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.47e-01 92.3% 19.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4967822 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 55.0 6.22e-01 75.0% 97.5%
3700010 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 49.0 3.03e-01 71.2% 39.2%
3663352 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.09e-01 84.6% 71.7%
3816553 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.67 50.0 4.95e-01 80.8% 81.8%
5025694 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.67 43.0 3.09e-01 73.1% 21.9%
3968213 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 3.02e-01 80.8% 23.2%
3441818 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 47.0 4.64e-01 80.8% 72.7%
4397965 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 3.18e-01 73.1% 25.7%
3718984 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.64 45.0 4.29e-01 76.9% 73.8%
3993317 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 47.0 4.35e-01 82.7% 87.1%
5079687 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.20e-01 100.0% 27.7%
3903614 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.62 43.0 4.05e-01 73.1% 56.9%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.62 52.0 4.26e-01 100.0% 85.7%
3578824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 55.0 4.58e-01 100.0% 70.0%
3251948 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.62 43.0 4.18e-01 76.9% 65.0%
3271692 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.02e-01 94.2% 22.1%
4029737 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 53.0 2.97e-01 100.0% 17.5%
3520328 5.1.5.152 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BBS2_N, BBS2_Mid 0.61 51.0 3.30e-01 100.0% 45.6%
4578889 10.1.1.3 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.61 46.0 2.94e-01 84.6% 67.1%
4036368 2003.1.5.71 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 0.61 42.0 2.62e-01 75.0% 77.9%
3263502 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.61 47.0 3.98e-01 84.6% 60.0%
3407973 59.1.2.2 beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › Ydr279_N 0.60 45.0 4.01e-01 80.8% 100.0%
3557192 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.60 50.0 3.03e-01 96.2% 32.1%
4263982 375.1.1.302 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.60 43.0 4.30e-01 76.9% 70.9%
3378005 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 47.0 3.01e-01 92.3% 38.6%
4475754 4076.2.1.5 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP 0.59 43.0 4.04e-01 76.9% 60.0%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.59 51.0 3.06e-01 100.0% 47.6%
3218844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.33e-01 98.1% 72.2%
3247746 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.59 49.0 3.14e-01 100.0% 33.4%
3903618 219.1.1.54 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.59 49.0 3.16e-01 100.0% 89.7%
3519934 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.59 48.0 3.27e-01 100.0% 46.5%
3761045 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.59 48.0 2.99e-01 100.0% 28.9%
3577912 375.1.1.202 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.58 41.0 4.24e-01 76.9% 80.0%
3936802 10.1.1.90 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.58 42.0 3.11e-01 80.8% 64.0%
4129996 375.1.1.239 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › UPF0515 0.57 38.0 4.18e-01 75.0% 90.0%
5046207 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 3.00e-01 100.0% 41.5%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.57 45.0 2.76e-01 100.0% 34.9%
5030111 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.56 39.0 3.73e-01 73.1% 71.9%
3185751 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 47.0 2.85e-01 98.1% 31.9%
3924073 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.45e-01 82.7% 73.3%
3500264 5.1.3.69 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TFIIIC_delta 0.56 45.0 2.80e-01 100.0% 47.7%
3529581 103.1.1.67 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 0.55 38.0 3.98e-01 76.9% 82.2%
3879550 244.2.1.12 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › CFAP61_dimer 0.55 40.0 3.12e-01 82.7% 56.2%
3804746 1.1.11.6 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.55 41.0 3.23e-01 82.7% 51.3%
5044354 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.55 38.0 3.48e-01 73.1% 64.0%
3380688 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 45.0 2.92e-01 100.0% 40.7%
4934222 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.54 37.0 3.51e-01 73.1% 67.6%
3997447 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.54 45.0 2.84e-01 98.1% 33.6%
5071572 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.83e-01 84.6% 89.2%
3391363 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.53 37.0 2.61e-01 75.0% 93.3%
1 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.52 37.0 2.65e-01 80.8% 36.9%
3528458 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.52 38.0 3.16e-01 80.8% 45.0%
3740467 5.1.4.300 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR5 0.52 42.0 2.66e-01 100.0% 23.8%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 41.0 2.64e-01 98.1% 67.1%
4862662 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.50 40.0 2.57e-01 100.0% 29.2%
4484797 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.50 39.0 2.48e-01 98.1% 26.5%
3556309 10.32.1.68 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.50 38.0 2.82e-01 90.4% 35.3%