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OQ938575.1__WIC88854.1__SEA_ONIONKNIGHT_48__00048

Bact-Vir

OQ938575.1__WIC88854.1__SEA_ONIONKNIGHT_48__00048

Identity

Accession:
OQ938575 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_OnionKnight

TaxID: 3049362

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-87
PDB
Domain cluster: rep: NC_042336.1__YP_009638413.1__FGG38_gp52__00052__D21-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02467.22 best Whib 54.5 2.00e-14 72.6% 84.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959743 1022.2.1.0 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 0.86 64.0 7.29e-01 79.8% 100.0%
3959281 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.86 52.0 6.47e-01 76.2% 94.5%
2988223 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.84 66.0 6.58e-01 85.7% 81.2%
3027027 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.83 67.0 6.69e-01 84.5% 89.4%
2724064 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.82 62.0 6.36e-01 90.5% 82.5%
3954362 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.78 65.0 5.90e-01 89.3% 95.5%
3286828 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.74 55.0 6.14e-01 94.0% 100.0%
3951668 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.70 55.0 5.86e-01 84.5% 98.6%
3760112 109.4.1.501 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UME 0.51 39.0 2.66e-01 83.3% 29.3%
D2 high residues 108-171
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 48.0 3.65e-01 73.4% 64.6%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 39.0 3.79e-01 73.4% 95.8%
2csuA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.55 38.0 2.94e-01 75.0% 57.8%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 3.78e-01 81.2% 82.9%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 38.0 3.53e-01 75.0% 73.4%
1wcwA01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 39.0 3.27e-01 82.8% 75.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600071 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 50.0 5.01e-01 70.3% 95.4%
3644885 3758.1.1.31 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › DUF677 0.61 48.0 3.14e-01 87.5% 69.2%
3705785 3050.1.1.30 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 0.58 47.0 4.11e-01 87.5% 67.4%
5071689 2007.3.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.57 38.0 2.88e-01 70.3% 42.4%
4956940 2007.3.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.53 37.0 2.87e-01 75.0% 41.9%
4964944 2006.1.4.25 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I 0.51 41.0 2.86e-01 87.5% 56.7%