←Back to structures

OQ938576.1__WIC88923.1__SEA_SHAGRAT_54__00054

Bact-Vir

OQ938576.1__WIC88923.1__SEA_SHAGRAT_54__00054

Identity

Accession:
OQ938576 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodococcus_phage_Shagrat

TaxID: 3049363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-84
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.33e-01 80.3% 56.6%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 39.0 3.15e-01 84.2% 63.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3951668 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.85 76.0 7.73e-01 98.7% 98.6%
3954362 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.82 75.0 6.53e-01 98.7% 88.2%
3959743 1022.2.1.0 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 0.80 65.0 6.96e-01 89.5% 100.0%
2988223 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.79 65.0 6.24e-01 90.8% 77.6%
3959281 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.79 53.0 6.08e-01 76.3% 94.5%
3286828 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.77 61.0 6.55e-01 90.8% 98.5%
3027027 1022.2.1.1 ↗ alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib 0.76 63.0 6.07e-01 89.5% 84.7%
4015774 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 2.54e-01 97.4% 8.1%
3486304 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 3.84e-01 93.4% 85.0%
D2 high residues 93-143
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2im9A01 1.10.3670.10 Mainly Alpha › Orthogonal Bundle › Putative xylanase fold › Putative xylanase like domain 0.55 37.0 2.97e-01 72.5% 68.1%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 2.83e-01 84.3% 32.4%
4rhiA00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.50 43.0 2.72e-01 100.0% 65.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 52.0 4.45e-01 100.0% 83.5%
3456544 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 39.0 3.10e-01 74.5% 39.8%
3413693 386.1.1.134 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_15 0.54 37.0 3.47e-01 74.5% 55.7%
6465 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.52 44.0 2.90e-01 100.0% 32.5%
3567791 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.51 37.0 3.00e-01 76.5% 86.0%