OQ938576.1WIC88963.1SEA_SHAGRAT_96__00096

Bact-Vir

OQ938576.1__WIC88963.1__SEA_SHAGRAT_96__00096

Identity

85.4 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodococcus_phage_Shagrat

TaxID: 3049363

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09250.17 best	Prim-Pol	29.7	1.20e-06	70.2%	32.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1nf2A02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.50	34.0	3.28e-01	76.6%	61.3%

D2 high residues 102-205

PDB

Domain cluster: rep: NC_027397.1__YP_009153053.1__ACQ41_gp27__00027__D86-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF09250.17 best	Prim-Pol	72.6	7.10e-20	95.2%	63.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2atzA00	3.90.920.20	Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like	0.54	46.0	3.92e-01	94.2%	59.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3280020	862.1.1.3 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol	0.79	73.0	6.06e-01	100.0%	61.7%
4940784	862.1.1.3 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol	0.74	64.0	5.56e-01	100.0%	62.6%
5037338	862.1.1.1 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S	0.68	60.0	4.53e-01	100.0%	66.0%
3173372	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.55	43.0	4.53e-01	86.5%	95.6%
4994799	304.16.1.1 ↗	a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE	0.50	37.0	4.01e-01	90.4%	100.0%
3345883	304.9.1.47 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283	0.50	36.0	3.94e-01	76.9%	96.5%
3324171	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.50	33.0	3.80e-01	71.2%	97.1%
3289874	886.1.1.2 ↗	a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like	0.50	40.0	3.61e-01	87.5%	83.3%

D3 high residues 227-322

PDB

Domain cluster: rep: MT121967.1__QIW90016.1__X__00007__D266-351

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4arnA00	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.51	35.0	2.60e-01	70.8%	35.0%
3na6A00	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.51	39.0	2.73e-01	83.3%	61.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4964833	304.24.1.40 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › BAT	0.60	31.0	3.86e-01	71.9%	81.7%
3716480	331.18.1.0 ↗	a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc	0.55	44.0	3.74e-01	100.0%	51.9%
3294481	210.2.1.1 ↗	a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C	0.53	44.0	3.12e-01	93.8%	78.2%
3971100	331.3.1.8 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18	0.51	44.0	4.30e-01	97.9%	98.2%