←Back to structures

OQ938581.1__WIC89412.1__SEA_MIEK_75__00075

Bact-Vir

OQ938581.1__WIC89412.1__SEA_MIEK_75__00075

Identity

Accession:
OQ938581 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bingvirus› Streptomyces_phage_Miek

TaxID: 3043921

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-69
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.72 60.0 5.34e-01 96.3% 85.2%
1bu6O01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 62.0 4.00e-01 98.1% 53.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.70 51.0 4.29e-01 77.8% 66.3%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.70 59.0 5.61e-01 100.0% 86.6%
1dx5M02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 59.0 4.64e-01 98.1% 77.3%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 58.0 3.78e-01 98.1% 52.4%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 56.0 5.10e-01 92.6% 78.1%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 59.0 4.25e-01 98.1% 56.1%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 57.0 5.07e-01 92.6% 70.1%
1p6oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.68 59.0 4.27e-01 100.0% 53.2%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 56.0 4.68e-01 92.6% 60.6%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 56.0 4.53e-01 98.1% 75.0%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 4.35e-01 92.6% 61.8%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.66 55.0 4.01e-01 94.4% 53.6%
6x4tA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.31e-01 94.4% 73.0%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 53.0 4.69e-01 94.4% 72.3%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.58e-01 94.4% 65.6%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 54.0 4.62e-01 98.1% 64.2%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.64 53.0 3.94e-01 94.4% 51.7%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.64 55.0 4.10e-01 98.1% 74.6%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 51.0 4.74e-01 92.6% 76.4%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.64 55.0 3.98e-01 98.1% 65.6%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.64 52.0 5.05e-01 96.3% 86.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.62 45.0 3.92e-01 77.8% 89.3%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.61 52.0 3.74e-01 98.1% 70.1%
1li1C00 2.170.240.10 Mainly Beta › Beta Complex › Noncollagenous (NC1) domain of collagen IV › Collagen IV, non-collagenous 0.61 46.0 3.08e-01 83.3% 79.0%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 45.0 3.72e-01 83.3% 52.0%
1r6vA01 2.60.40.1800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.83e-01 96.3% 65.6%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.31e-01 79.6% 49.2%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 43.0 3.30e-01 75.9% 68.9%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 41.0 3.37e-01 77.8% 68.4%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 3.49e-01 77.8% 72.5%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 3.24e-01 77.8% 39.4%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.94e-01 77.8% 77.4%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 45.0 3.04e-01 98.1% 69.4%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 40.0 3.17e-01 77.8% 93.6%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.39e-01 79.6% 95.7%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.30e-01 75.9% 45.1%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.83e-01 100.0% 78.4%
3h8vB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 2.80e-01 88.9% 46.8%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.31e-01 96.3% 39.0%
3zn6A01 2.60.120.1170 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.49e-01 100.0% 76.9%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.32e-01 96.3% 92.2%
1es2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 41.0 2.76e-01 92.6% 34.6%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.74e-01 90.7% 33.5%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 46.0 3.55e-01 98.1% 77.1%
1es7B00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 40.0 3.62e-01 92.6% 92.8%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 45.0 3.58e-01 98.1% 81.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 46.0 3.49e-01 98.1% 79.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 43.0 3.11e-01 98.1% 90.3%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 44.0 3.35e-01 98.1% 91.4%
1xp4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 38.0 2.59e-01 90.7% 30.9%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229807 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.75 64.0 5.69e-01 98.1% 86.3%
5055065 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 59.0 5.33e-01 88.9% 80.0%
3217685 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.72 60.0 5.95e-01 96.3% 91.4%
379802 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.72 60.0 5.22e-01 96.3% 68.6%
4028910 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.72 59.0 5.63e-01 96.3% 78.5%
3404658 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 61.0 5.33e-01 94.4% 77.5%
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.72 58.0 5.99e-01 94.4% 100.0%
3244285 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.71 60.0 5.50e-01 98.1% 89.3%
3940737 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 59.0 4.46e-01 90.7% 56.8%
4948579 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 57.0 4.72e-01 88.9% 58.9%
4024040 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.70 58.0 5.57e-01 98.1% 96.9%
3924848 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.70 58.0 5.26e-01 96.3% 77.3%
3695427 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.70 57.0 5.24e-01 96.3% 80.0%
3397582 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 3.96e-01 100.0% 36.3%
3363346 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.70 59.0 5.77e-01 98.1% 90.0%
3444777 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.70 59.0 5.92e-01 98.1% 96.4%
3662663 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.70 59.0 4.75e-01 98.1% 48.2%
3295690 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.69 58.0 5.55e-01 98.1% 84.6%
4295852 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.69 60.0 4.37e-01 98.1% 78.0%
4989773 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 56.0 4.91e-01 88.9% 67.5%
3784857 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.69 59.0 3.85e-01 96.3% 49.2%
3787008 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.69 57.0 5.46e-01 96.3% 93.8%
3933682 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.69 55.0 4.50e-01 96.3% 53.0%
4024679 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.69 57.0 5.54e-01 96.3% 95.0%
3249480 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 4.91e-01 92.6% 61.3%
3628468 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.69 56.0 5.15e-01 96.3% 77.3%
3252383 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.68 60.0 3.94e-01 100.0% 80.0%
2330554 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.68 57.0 5.10e-01 92.6% 76.6%
3925701 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.68 55.0 4.71e-01 96.3% 64.2%
5000939 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 59.0 4.89e-01 98.1% 72.6%
3323677 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.67 56.0 5.48e-01 96.3% 88.3%
3392258 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.67 56.0 4.10e-01 94.4% 67.1%
4958377 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.67 52.0 5.42e-01 88.9% 95.8%
5029369 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 55.0 4.78e-01 92.6% 70.6%
3600334 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 59.0 4.99e-01 100.0% 81.1%
3827574 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.67 55.0 5.38e-01 98.1% 88.3%
3743200 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.67 57.0 4.05e-01 98.1% 77.1%
5080816 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 55.0 4.15e-01 92.6% 55.6%
3928219 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 55.0 4.66e-01 92.6% 64.4%
3700912 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.66 56.0 5.31e-01 98.1% 81.5%
3267304 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.66 56.0 3.84e-01 98.1% 73.2%
3323055 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.66 54.0 5.22e-01 98.1% 84.6%
4461109 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.66 55.0 4.67e-01 92.6% 65.6%
3190606 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.65 55.0 4.33e-01 94.4% 58.3%
3613986 109.4.1.3310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GYF_2 0.65 55.0 3.31e-01 98.1% 13.2%
3599388 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.65 54.0 5.46e-01 98.1% 96.4%
5067734 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 56.0 4.95e-01 98.1% 76.2%
5034526 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.86e-01 92.6% 76.0%
3213622 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.65 56.0 4.17e-01 98.1% 78.5%
3472667 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 56.0 4.13e-01 98.1% 77.9%
3574017 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.65 54.0 5.03e-01 98.1% 77.1%
3930342 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.65 54.0 5.46e-01 100.0% 98.2%
3598676 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 3.82e-01 98.1% 74.2%
3518924 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.64 55.0 3.74e-01 98.1% 69.5%
3353030 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.64 52.0 4.41e-01 98.1% 55.0%
3308182 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.63 51.0 4.51e-01 98.1% 61.1%
4276062 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 54.0 4.59e-01 98.1% 84.4%
5077839 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.18e-01 92.6% 50.0%
3911109 386.1.1.290 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.62 54.0 4.63e-01 96.3% 62.4%
3601329 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 56.0 4.56e-01 98.1% 58.9%
4581597 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.61 52.0 4.38e-01 98.1% 82.1%
3633409 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 48.0 4.26e-01 98.1% 58.7%
3804735 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.61 50.0 4.93e-01 98.1% 86.4%
4144066 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.60 51.0 4.38e-01 98.1% 64.4%
4942034 288.1.1.0 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.60 50.0 3.84e-01 98.1% 63.0%
3803901 11.1.4.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.60 48.0 3.70e-01 96.3% 75.0%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.60 45.0 3.07e-01 79.6% 42.9%
4000826 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 52.0 3.94e-01 100.0% 47.7%
4953482 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.58 42.0 3.24e-01 75.9% 70.4%
5036380 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.58 42.0 3.45e-01 75.9% 86.0%
4945022 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.46e-01 79.6% 75.0%
3741339 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 43.0 3.50e-01 79.6% 80.6%
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 42.0 3.29e-01 79.6% 75.5%
4382604 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.29e-01 79.6% 56.2%
3275023 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 47.0 3.51e-01 98.1% 53.6%
3614140 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 48.0 3.43e-01 98.1% 74.8%
4945638 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 45.0 3.88e-01 98.1% 80.0%
5053041 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.42e-01 96.3% 71.9%
4020851 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.51e-01 98.1% 80.0%
3736912 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.53 47.0 3.49e-01 98.1% 82.3%
5077363 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 47.0 3.45e-01 98.1% 70.8%
4997750 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.39e-01 98.1% 71.1%
4945347 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.39e-01 98.1% 76.2%
3996654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 3.60e-01 100.0% 98.2%
D2 high residues 76-125
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.83 69.0 5.92e-01 94.0% 58.7%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 68.0 5.79e-01 92.0% 59.8%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.82 68.0 4.60e-01 92.0% 26.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.78 71.0 6.49e-01 100.0% 82.8%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.78 70.0 6.43e-01 100.0% 87.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 71.0 6.08e-01 100.0% 70.1%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.78 67.0 4.55e-01 100.0% 71.6%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 63.0 5.85e-01 96.0% 71.9%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 65.0 5.77e-01 94.0% 70.4%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.75 54.0 5.41e-01 98.0% 76.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 66.0 5.71e-01 100.0% 93.7%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 67.0 4.43e-01 100.0% 52.5%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.74 64.0 4.65e-01 100.0% 94.4%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 62.0 5.29e-01 94.0% 66.7%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 60.0 5.58e-01 94.0% 71.9%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 61.0 5.74e-01 98.0% 82.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 59.0 5.67e-01 96.0% 79.3%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.71 59.0 4.18e-01 100.0% 77.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 55.0 5.56e-01 84.0% 91.8%
2g2dA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.69 59.0 4.18e-01 100.0% 32.5%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 57.0 4.75e-01 100.0% 54.6%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.68 58.0 4.48e-01 100.0% 41.7%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 58.0 5.56e-01 100.0% 83.1%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.68 55.0 4.33e-01 98.0% 70.0%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 51.0 4.46e-01 84.0% 55.7%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 58.0 5.47e-01 100.0% 81.7%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 51.0 4.62e-01 84.0% 63.8%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 60.0 5.51e-01 100.0% 85.7%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 47.0 4.82e-01 80.0% 79.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.66 54.0 4.86e-01 94.0% 66.2%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.64 56.0 5.41e-01 100.0% 91.4%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.63 52.0 5.02e-01 100.0% 85.2%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 45.0 4.13e-01 78.0% 97.0%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.61 53.0 4.55e-01 100.0% 93.8%
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 45.0 3.84e-01 88.0% 58.2%
4dnnA00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 47.0 4.72e-01 94.0% 90.0%
1hwyA01 1.10.287.140 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 44.0 4.39e-01 100.0% 98.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3696717 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.95 88.0 5.71e-01 100.0% 26.3%
3735933 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.94 87.0 6.03e-01 100.0% 34.5%
3192503 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.93 73.0 5.69e-01 84.0% 42.0%
4291115 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.90 79.0 6.68e-01 96.0% 60.0%
3972992 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 78.0 7.11e-01 100.0% 83.1%
3601274 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.86 78.0 4.89e-01 100.0% 21.7%
4981035 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.86 77.0 7.04e-01 100.0% 80.0%
3691750 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.86 75.0 5.34e-01 100.0% 34.2%
4309485 4229.1.1.2 ↗ alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase 0.85 75.0 4.43e-01 100.0% 15.2%
5047182 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.85 75.0 6.94e-01 100.0% 78.5%
3725377 192.15.1.44 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 0.84 75.0 6.14e-01 100.0% 55.6%
1123314 3615.1.1.2 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › DLP_helical 0.82 68.0 6.82e-01 100.0% 90.2%
3679373 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 72.0 6.55e-01 96.0% 75.4%
3484968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.79 71.0 4.55e-01 100.0% 34.8%
3218199 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.78 60.0 4.73e-01 80.0% 48.9%
5030596 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.77 65.0 6.06e-01 100.0% 83.1%
3227723 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.76 62.0 6.22e-01 88.0% 94.0%
3973636 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 60.0 5.29e-01 100.0% 65.3%
4174593 3922.1.1.248 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF25876 0.69 60.0 5.27e-01 100.0% 65.3%
3941960 5086.1.1.86 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG 0.69 61.0 4.57e-01 100.0% 92.0%
4432304 3390.1.1.0 ↗ extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.68 52.0 5.24e-01 88.0% 88.0%
3512559 192.1.1.37 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.63 52.0 4.84e-01 96.0% 76.9%
3473827 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 52.0 5.02e-01 100.0% 83.3%