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OQ938582.1__WIC89480.1__SEA_BAJUNIPER_57__00057

Bact-Vir

OQ938582.1__WIC89480.1__SEA_BAJUNIPER_57__00057

Identity

Accession:
OQ938582 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-46
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yqgA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.85 74.0 5.47e-01 100.0% 38.9%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.85 60.0 3.76e-01 76.7% 15.8%
1bvsF03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.85 59.0 5.89e-01 74.4% 71.1%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.85 74.0 5.57e-01 100.0% 41.7%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.82 66.0 5.16e-01 88.4% 63.6%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.82 67.0 4.12e-01 90.7% 16.3%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 71.0 6.55e-01 100.0% 78.2%
3fkeA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.80 65.0 5.37e-01 86.0% 53.5%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.79 68.0 4.58e-01 100.0% 89.6%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.77 58.0 4.57e-01 88.4% 37.8%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.76 62.0 4.51e-01 90.7% 90.7%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.72 59.0 4.41e-01 93.0% 36.4%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.70 56.0 5.07e-01 95.3% 65.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.69 61.0 3.70e-01 100.0% 48.3%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.68 55.0 3.99e-01 100.0% 31.4%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 51.0 5.10e-01 95.3% 89.1%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.65 51.0 3.34e-01 86.0% 69.4%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 48.0 3.51e-01 88.4% 26.4%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 51.0 3.68e-01 97.7% 29.0%
1nvpB00 1.10.287.100 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 49.0 4.94e-01 100.0% 93.0%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 47.0 3.23e-01 83.7% 23.2%
1x93A01 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.62 41.0 4.38e-01 74.4% 82.9%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 52.0 4.10e-01 93.0% 47.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.24e-01 95.3% 95.5%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 48.0 3.35e-01 93.0% 42.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4189523 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 68.0 6.71e-01 76.7% 73.3%
3257458 633.6.1.2 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.93 71.0 4.57e-01 86.0% 20.8%
3219554 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.89 74.0 7.05e-01 95.3% 78.0%
4979226 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.89 66.0 4.79e-01 79.1% 30.9%
3813623 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.87 79.0 5.59e-01 95.3% 37.3%
3686730 3443.1.1.1 alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › Get5_C 0.83 66.0 6.85e-01 88.4% 95.0%
4990523 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.83 72.0 5.59e-01 100.0% 46.3%
3188842 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.82 71.0 5.08e-01 100.0% 34.4%
3400315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 68.0 6.20e-01 90.7% 72.7%
3344802 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.81 66.0 5.76e-01 95.3% 60.0%
3685821 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.80 68.0 5.07e-01 100.0% 37.4%
3881712 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.80 69.0 4.89e-01 100.0% 31.9%
3909952 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.79 67.0 4.04e-01 100.0% 14.1%
5082520 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 5.50e-01 81.4% 68.0%
3384318 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.77 63.0 5.21e-01 90.7% 52.0%
3255785 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.77 64.0 4.87e-01 100.0% 39.1%
3653791 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.77 61.0 5.01e-01 86.0% 52.0%
3284626 7581.1.1.2 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt 0.77 57.0 3.44e-01 88.4% 12.1%
5057910 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.69 51.0 3.32e-01 86.0% 17.6%
4928759 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 51.0 5.06e-01 79.1% 88.9%
4379 3014.1.1.1 alpha duplicates or obligate multimers › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Middle operon regulator dimerization domain › Mor 0.67 51.0 5.10e-01 95.3% 89.1%
5027211 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.67 57.0 3.74e-01 100.0% 37.4%
D2 high residues 57-100
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 58.0 3.94e-01 100.0% 32.9%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 49.0 3.98e-01 86.4% 71.6%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.63 53.0 4.69e-01 97.7% 100.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.60 49.0 4.30e-01 100.0% 65.8%
4gjtC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 3.80e-01 100.0% 58.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.26e-01 75.0% 94.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 45.0 4.13e-01 97.7% 100.0%
4lj3A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.58 43.0 2.81e-01 88.6% 25.4%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.58 49.0 3.56e-01 100.0% 34.7%
1l4dB00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 3.25e-01 100.0% 33.0%
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.57 49.0 4.01e-01 100.0% 60.7%
1elvA03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 43.0 3.86e-01 86.4% 65.2%
4uzgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 3.55e-01 100.0% 47.9%
1u7pD00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 42.0 3.00e-01 90.9% 83.2%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.55 42.0 3.41e-01 93.2% 98.1%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.55 38.0 3.50e-01 81.8% 53.2%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.54 43.0 3.46e-01 100.0% 71.2%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.08e-01 100.0% 96.2%
4f4oC01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 41.0 3.85e-01 88.6% 94.7%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 2.77e-01 88.6% 38.8%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 45.0 4.29e-01 100.0% 100.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.30e-01 100.0% 38.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 40.0 3.68e-01 100.0% 85.7%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 41.0 2.85e-01 95.5% 47.6%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 43.0 3.23e-01 100.0% 68.1%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4471927 6016.1.1.1 a+b two layers › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Poly_export 0.76 65.0 5.32e-01 100.0% 94.1%
3969322 6016.1.1.1 a+b two layers › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Poly_export 0.73 60.0 5.08e-01 97.7% 100.0%
3386737 6016.1.1.1 a+b two layers › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Poly_export 0.71 59.0 5.22e-01 100.0% 100.0%
3992801 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.64 50.0 3.97e-01 86.4% 73.3%
4880562 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.64 53.0 3.10e-01 100.0% 15.8%
3252873 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 42.0 3.34e-01 100.0% 31.1%
3998997 389.1.2.9 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.61 48.0 3.82e-01 86.4% 72.2%
4946539 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 47.0 4.03e-01 97.7% 52.0%
3992824 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.60 45.0 3.70e-01 86.4% 71.1%
3971219 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.60 48.0 3.07e-01 97.7% 62.8%
5017142 11.4.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.60 51.0 3.71e-01 100.0% 42.2%
3942089 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.59 47.0 3.05e-01 100.0% 60.6%
3265117 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 3.80e-01 100.0% 39.1%
6102 221.1.1.15 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Staphylokinase 0.57 42.0 3.25e-01 100.0% 33.0%
3499652 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 42.0 2.66e-01 86.4% 29.6%
119219 3119.1.1.1 few secondary structure elements › CopK › CopK › CopK › CopK 0.56 44.0 3.89e-01 95.5% 56.8%
3570436 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.56 42.0 3.69e-01 86.4% 65.7%
3709391 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 47.0 3.45e-01 100.0% 52.8%
3285031 11.4.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.55 45.0 3.31e-01 100.0% 40.3%
3387370 4167.1.1.1 beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.54 42.0 3.13e-01 93.2% 94.1%
4007436 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.54 39.0 2.57e-01 88.6% 26.3%
4183397 4167.1.1.1 beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.53 42.0 3.03e-01 97.7% 90.6%
4882673 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.53 41.0 3.65e-01 88.6% 79.4%
3550747 11.1.1.189 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PTCRA 0.53 44.0 3.44e-01 100.0% 60.0%
4177346 865.1.1.2 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.52 39.0 3.14e-01 100.0% 76.8%
4945686 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 2.95e-01 97.7% 42.1%
3411414 385.1.1.12 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Spaetzle 0.51 39.0 3.06e-01 95.5% 61.0%
3997935 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.50 37.0 3.01e-01 90.9% 73.3%
3554716 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.50 38.0 3.63e-01 88.6% 94.5%