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OQ938587.1__WIC89812.1__SEA_SAPO_41__00041
Bact-VirOQ938587.1__WIC89812.1__SEA_SAPO_41__00041
Identity
- Accession:
- OQ938587 ↗
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Taxonomy
TaxID: 3035389
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-43
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.91 | 67.0 | 4.31e-01 | 78.0% | 22.1% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.90 | 63.0 | 3.65e-01 | 78.0% | 10.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 66.0 | 5.86e-01 | 80.5% | 67.2% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 66.0 | 5.94e-01 | 80.5% | 70.9% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 66.0 | 6.34e-01 | 80.5% | 84.8% |
| 4eeiA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.85 | 57.0 | 4.58e-01 | 73.2% | 37.2% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.84 | 62.0 | 5.07e-01 | 78.0% | 88.4% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.83 | 62.0 | 4.90e-01 | 80.5% | 41.2% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 61.0 | 4.84e-01 | 80.5% | 74.4% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.81 | 58.0 | 5.02e-01 | 78.0% | 48.5% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.81 | 59.0 | 4.49e-01 | 78.0% | 35.2% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.81 | 58.0 | 5.17e-01 | 78.0% | 54.2% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.80 | 56.0 | 4.40e-01 | 80.5% | 36.0% |
| 1uejB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 55.0 | 3.50e-01 | 78.0% | 15.9% |
| 1zx3A01 | 1.10.287.1020 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like | 0.76 | 53.0 | 4.25e-01 | 75.6% | 37.6% |
| 1gkuB08 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.75 | 54.0 | 3.90e-01 | 78.0% | 32.8% |
| 2dbuB00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.72 | 62.0 | 4.01e-01 | 100.0% | 36.8% |
| 3gl5A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.71 | 50.0 | 3.16e-01 | 75.6% | 19.0% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.70 | 51.0 | 4.14e-01 | 80.5% | 45.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 50.0 | 4.69e-01 | 80.5% | 61.5% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.69 | 49.0 | 3.56e-01 | 78.0% | 31.2% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.67 | 50.0 | 3.65e-01 | 80.5% | 48.7% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.67 | 46.0 | 3.59e-01 | 78.0% | 31.0% |
| 2uvgA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 49.0 | 3.05e-01 | 87.8% | 14.7% |
| 1m5yA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.65 | 48.0 | 3.33e-01 | 78.0% | 27.4% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 48.0 | 4.52e-01 | 87.8% | 66.0% |
| 3rrwB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.63 | 52.0 | 3.47e-01 | 100.0% | 28.6% |
| 1v92A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 45.0 | 4.43e-01 | 78.0% | 69.6% |
| 4bvxA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 51.0 | 3.89e-01 | 100.0% | 68.6% |
| 2yweA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 43.0 | 2.88e-01 | 80.5% | 19.8% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 36.0 | 3.07e-01 | 75.6% | 73.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266945 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.95 | 68.0 | 5.69e-01 | 75.6% | 47.7% |
| 3740141 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.94 | 70.0 | 4.46e-01 | 78.0% | 19.6% |
| 3448847 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.91 | 62.0 | 3.65e-01 | 78.0% | 10.5% |
| 3612189 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.89 | 65.0 | 6.35e-01 | 78.0% | 71.1% |
| 3430288 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.89 | 65.0 | 6.98e-01 | 78.0% | 91.4% |
| 3951854 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.89 | 66.0 | 5.79e-01 | 80.5% | 65.0% |
| 3924698 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.89 | 65.0 | 6.30e-01 | 78.0% | 71.1% |
| 3621722 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.87 | 62.0 | 6.01e-01 | 75.6% | 68.9% |
| 3706295 | 103.1.1.103 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF29442 | 0.86 | 61.0 | 5.72e-01 | 75.6% | 62.0% |
| 3607039 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.86 | 59.0 | 6.04e-01 | 78.0% | 75.0% |
| 3226420 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.86 | 62.0 | 6.07e-01 | 78.0% | 71.1% |
| 5003091 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.85 | 61.0 | 5.41e-01 | 78.0% | 53.3% |
| 3454650 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.85 | 58.0 | 5.88e-01 | 75.6% | 72.5% |
| 3654319 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.84 | 61.0 | 5.96e-01 | 78.0% | 71.1% |
| 3243704 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 61.0 | 5.96e-01 | 78.0% | 71.1% |
| 4025664 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.84 | 58.0 | 5.44e-01 | 73.2% | 60.0% |
| 4183750 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.84 | 58.0 | 4.58e-01 | 73.2% | 37.5% |
| 3493528 | 109.4.1.2245 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27652 | 0.83 | 73.0 | 4.12e-01 | 97.6% | 11.2% |
| 2091493 | 103.1.1.19 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA | 0.83 | 57.0 | 5.69e-01 | 78.0% | 69.8% |
| 3481218 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.83 | 73.0 | 4.13e-01 | 97.6% | 11.8% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.83 | 60.0 | 4.68e-01 | 80.5% | 37.6% |
| 3367165 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.82 | 59.0 | 5.24e-01 | 78.0% | 53.3% |
| 3803934 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.81 | 57.0 | 5.21e-01 | 75.6% | 58.2% |
| 3651776 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.81 | 63.0 | 4.01e-01 | 90.2% | 18.4% |
| 3678066 | 101.1.11.40 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1677 | 0.81 | 58.0 | 4.87e-01 | 78.0% | 75.7% |
| 4024033 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.81 | 58.0 | 5.29e-01 | 78.0% | 58.2% |
| 3887634 | 109.4.1.2146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27652, PF30701 | 0.80 | 71.0 | 3.98e-01 | 100.0% | 13.0% |
| 4012761 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.80 | 70.0 | 4.18e-01 | 97.6% | 30.4% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.80 | 58.0 | 4.21e-01 | 78.0% | 29.1% |
| 4510528 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.79 | 57.0 | 4.43e-01 | 78.0% | 36.7% |
| 3449836 | 109.4.1.3366 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LRRK2, PF27652, PF30701 | 0.79 | 70.0 | 3.91e-01 | 100.0% | 10.8% |
| 3389858 | 3379.1.1.0 ↗ | extended segments › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 | 0.79 | 56.0 | 5.46e-01 | 80.5% | 68.9% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.78 | 64.0 | 6.30e-01 | 95.1% | 88.9% |
| 4466751 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.78 | 66.0 | 6.52e-01 | 100.0% | 93.3% |
| 3978473 | 101.1.8.9 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Integrase_1 | 0.77 | 65.0 | 5.37e-01 | 97.6% | 64.0% |
| 3435282 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.76 | 55.0 | 4.85e-01 | 78.0% | 61.7% |
| 4085415 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.75 | 61.0 | 5.88e-01 | 100.0% | 84.0% |
| 4976716 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 54.0 | 4.57e-01 | 78.0% | 55.7% |
| 4984680 | 3962.1.1.1 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N | 0.75 | 59.0 | 3.89e-01 | 87.8% | 27.1% |
| 5047300 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.74 | 63.0 | 5.32e-01 | 92.7% | 60.0% |
| 3870191 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.74 | 50.0 | 3.40e-01 | 73.2% | 19.3% |
| 4158504 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.73 | 59.0 | 5.78e-01 | 95.1% | 88.9% |
| 5079264 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 49.0 | 2.99e-01 | 100.0% | 14.6% |