←Back to structures

OQ938592.1__WIC90205.1__SEA_VROOMVROOM_55__00055

Bact-Vir

OQ938592.1__WIC90205.1__SEA_VROOMVROOM_55__00055

Identity

Accession:
OQ938592 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Hilgardvirus› Arthrobacter_phage_VroomVroom

TaxID: 3049371

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 36.0 4.49e-01 72.4% 87.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 46.0 3.87e-01 74.1% 65.4%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 47.0 3.94e-01 77.6% 65.0%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 37.0 4.18e-01 96.6% 79.1%
2egtA01 6.20.50.50 Special › Other non-globular › N-terminal domain of TfIIb › 0.61 31.0 3.77e-01 89.7% 100.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 41.0 4.03e-01 74.1% 63.6%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.58 48.0 3.72e-01 100.0% 80.1%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 32.0 3.72e-01 86.2% 83.8%
6uf3A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.56 42.0 2.82e-01 84.5% 61.8%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 31.0 3.48e-01 79.3% 76.9%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 45.0 2.88e-01 100.0% 25.5%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.81e-01 96.6% 37.9%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 34.0 3.19e-01 84.5% 50.7%
1z8gA01 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.51 41.0 3.54e-01 94.8% 91.3%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 43.0 2.87e-01 100.0% 77.0%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 38.0 3.88e-01 96.6% 83.6%
4nozB01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 31.0 3.26e-01 94.8% 66.7%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 34.0 2.58e-01 72.4% 95.8%
2bjoA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 30.0 3.45e-01 94.8% 85.4%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 3.91e-01 87.9% 100.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478119 377.1.1.91 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAP206 0.68 47.0 4.40e-01 74.1% 100.0%
4003256 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 39.0 4.16e-01 72.4% 66.0%
4602126 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 47.0 3.85e-01 74.1% 61.8%
3230560 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 33.0 3.96e-01 89.7% 71.4%
3344139 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 41.0 4.22e-01 74.1% 69.1%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.64 43.0 4.43e-01 77.6% 74.5%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.63 42.0 4.25e-01 75.9% 68.3%
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 42.0 4.23e-01 75.9% 68.3%
3397612 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 42.0 4.21e-01 70.7% 85.0%
3649933 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 39.0 4.15e-01 75.9% 74.0%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 42.0 4.48e-01 75.9% 84.0%
4459875 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.61 39.0 4.16e-01 74.1% 77.6%
4969758 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.61 41.0 3.62e-01 75.9% 45.6%
4568757 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.61 41.0 4.13e-01 74.1% 70.0%
1396826 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.60 41.0 4.01e-01 74.1% 62.7%
3509582 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.59 52.0 3.68e-01 100.0% 48.1%
4959480 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 40.0 3.98e-01 74.1% 70.0%
4507628 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.57 37.0 3.97e-01 75.9% 84.4%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 40.0 3.98e-01 74.1% 80.0%
3761115 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.85e-01 100.0% 22.6%
3267950 207.1.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.54 38.0 2.72e-01 74.1% 55.1%
5082740 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.54 36.0 3.19e-01 70.7% 83.2%
4090099 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.53 36.0 3.20e-01 100.0% 46.1%
140391 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 42.0 3.97e-01 94.8% 73.2%
4342292 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.52 35.0 3.61e-01 84.5% 76.4%
4024189 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 35.0 3.01e-01 77.6% 91.8%
3899209 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 36.0 2.60e-01 79.3% 83.6%
3840033 2003.1.15.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.50 35.0 2.55e-01 75.9% 70.3%