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OQ938593.1__WIF20470.1__SEA_BERKA_6__00006
Bact-VirOQ938593.1__WIF20470.1__SEA_BERKA_6__00006
Identity
- Accession:
- OQ938593 ↗
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-130
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.75 | 65.0 | 5.30e-01 | 90.6% | 55.3% |
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.75 | 64.0 | 5.22e-01 | 90.6% | 61.8% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.74 | 47.0 | 5.38e-01 | 96.1% | 88.0% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.73 | 43.0 | 5.38e-01 | 98.4% | 97.3% |
| 2eqnA01 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.70 | 43.0 | 5.09e-01 | 96.9% | 90.8% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 40.0 | 4.82e-01 | 91.4% | 84.9% |
| 1cmvB00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.69 | 60.0 | 4.99e-01 | 91.4% | 58.3% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.67 | 44.0 | 4.69e-01 | 76.6% | 75.7% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 45.0 | 4.60e-01 | 76.6% | 75.4% |
| 3cnrB00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 42.0 | 4.84e-01 | 77.3% | 94.6% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 40.0 | 4.06e-01 | 78.9% | 66.4% |
| 1vioA03 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.61 | 34.0 | 4.07e-01 | 80.5% | 82.9% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.60 | 33.0 | 3.98e-01 | 71.1% | 81.7% |
| 1fjeB01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 35.0 | 4.26e-01 | 89.8% | 91.4% |
| 1dn0D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 4.36e-01 | 99.2% | 93.6% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 28.0 | 3.75e-01 | 72.7% | 89.4% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 29.0 | 3.42e-01 | 71.1% | 69.6% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 29.0 | 3.46e-01 | 71.1% | 74.1% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 28.0 | 3.52e-01 | 71.9% | 82.4% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 35.0 | 4.05e-01 | 96.9% | 94.4% |
| 1owxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 32.0 | 3.42e-01 | 90.6% | 66.4% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 33.0 | 3.48e-01 | 100.0% | 69.6% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 33.0 | 3.85e-01 | 71.1% | 91.8% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 40.0 | 3.77e-01 | 78.9% | 75.6% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.52 | 32.0 | 3.69e-01 | 90.6% | 86.4% |
| 2a6mA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.52 | 39.0 | 3.94e-01 | 84.4% | 78.5% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.73e-01 | 79.7% | 75.0% |
| 3u5eU00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 34.0 | 3.79e-01 | 82.8% | 86.0% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.57e-01 | 79.7% | 79.9% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.49e-01 | 79.7% | 71.9% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.70e-01 | 79.7% | 73.2% |
| 3hx9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.64e-01 | 81.2% | 83.7% |
| 2qckA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 38.0 | 3.61e-01 | 79.7% | 76.8% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.91 | 80.0 | 7.64e-01 | 91.4% | 89.0% |
| 5083161 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.89 | 85.0 | 8.09e-01 | 99.2% | 99.3% |
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.87 | 74.0 | 7.17e-01 | 88.3% | 95.7% |
| 4032431 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.86 | 78.0 | 7.20e-01 | 94.5% | 91.0% |
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.86 | 81.0 | 7.33e-01 | 100.0% | 96.4% |
| 3945940 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.85 | 81.0 | 7.74e-01 | 100.0% | 96.6% |
| 3980142 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.84 | 79.0 | 7.46e-01 | 100.0% | 99.3% |
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.83 | 71.0 | 7.24e-01 | 91.4% | 91.2% |
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.83 | 71.0 | 6.85e-01 | 89.1% | 92.1% |
| 1933303 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.83 | 78.0 | 7.08e-01 | 100.0% | 95.2% |
| 5003309 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.80 | 68.0 | 6.83e-01 | 89.1% | 92.3% |
| 3955063 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.80 | 47.0 | 4.48e-01 | 90.6% | 51.7% |
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.79 | 68.0 | 6.40e-01 | 90.6% | 90.8% |
| 3959024 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.79 | 45.0 | 4.97e-01 | 89.1% | 69.5% |
| 3277706 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.78 | 47.0 | 4.53e-01 | 91.4% | 54.3% |
| 3953574 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.78 | 46.0 | 4.46e-01 | 90.6% | 53.6% |
| 3956379 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.78 | 46.0 | 4.33e-01 | 90.6% | 50.0% |
| 3286366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.78 | 46.0 | 4.52e-01 | 90.6% | 55.6% |
| 3957231 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.78 | 46.0 | 4.92e-01 | 90.6% | 68.2% |
| 3290923 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 45.0 | 4.48e-01 | 90.6% | 55.6% |
| 3957158 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 45.0 | 4.94e-01 | 89.8% | 70.5% |
| 3347366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 45.0 | 4.80e-01 | 89.8% | 65.2% |
| 3289705 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 45.0 | 4.38e-01 | 90.6% | 53.6% |
| 3964748 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 60.0 | 6.62e-01 | 93.0% | 100.0% |
| 5041607 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 44.0 | 5.61e-01 | 97.7% | 98.6% |
| 5077063 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.76 | 45.0 | 5.68e-01 | 96.9% | 100.0% |
| 5004197 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.75 | 54.0 | 6.05e-01 | 73.4% | 100.0% |
| 5051893 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 47.0 | 5.75e-01 | 96.1% | 98.8% |
| 4942485 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 47.0 | 5.73e-01 | 96.9% | 98.8% |
| 3952336 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 47.0 | 4.48e-01 | 90.6% | 54.0% |
| 3710481 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 48.0 | 5.55e-01 | 96.1% | 91.1% |
| 5041618 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 48.0 | 5.46e-01 | 96.9% | 87.2% |
| 1304358 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.75 | 65.0 | 5.30e-01 | 91.4% | 58.1% |
| 788 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.75 | 65.0 | 5.30e-01 | 90.6% | 55.3% |
| 5002426 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 47.0 | 5.64e-01 | 96.9% | 95.3% |
| 3282819 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 44.0 | 4.29e-01 | 90.6% | 53.6% |
| 27577 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.74 | 64.0 | 5.15e-01 | 90.6% | 60.2% |
| 4001416 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.74 | 46.0 | 5.53e-01 | 96.1% | 94.1% |
| 3602200 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 42.0 | 5.40e-01 | 96.9% | 100.0% |
| 4964309 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.74 | 43.0 | 5.43e-01 | 97.7% | 98.6% |
| 5035997 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 41.0 | 5.40e-01 | 97.7% | 100.0% |
| 5074238 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 43.0 | 5.52e-01 | 97.7% | 100.0% |
| 5041953 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 36.0 | 5.04e-01 | 85.2% | 100.0% |
| 3272018 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.72 | 49.0 | 5.37e-01 | 96.9% | 85.4% |
| 5017568 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.72 | 44.0 | 5.45e-01 | 96.9% | 98.8% |
| 3483841 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.71 | 47.0 | 5.20e-01 | 96.9% | 83.5% |
| 1150480 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.71 | 51.0 | 5.68e-01 | 73.4% | 99.0% |
| 3284857 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.71 | 44.0 | 4.14e-01 | 90.6% | 52.7% |
| 77 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 44.0 | 4.71e-01 | 76.6% | 76.4% |
| 3982061 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 47.0 | 4.79e-01 | 89.8% | 74.4% |
| 3714390 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.66 | 49.0 | 4.99e-01 | 94.5% | 78.4% |
| 3596757 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 48.0 | 5.26e-01 | 94.5% | 92.4% |
| 3943528 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.66 | 47.0 | 4.85e-01 | 89.8% | 77.5% |
| 5000784 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.65 | 47.0 | 5.25e-01 | 96.1% | 96.0% |
| 4913412 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.64 | 46.0 | 4.70e-01 | 91.4% | 76.0% |
| 3612838 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 36.0 | 4.16e-01 | 100.0% | 80.0% |
| 3786521 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.61 | 48.0 | 5.08e-01 | 96.9% | 93.0% |
| 3700732 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 35.0 | 3.95e-01 | 99.2% | 74.7% |
| 4345078 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 30.0 | 3.81e-01 | 74.2% | 82.7% |
| 5036839 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 29.0 | 3.78e-01 | 70.3% | 87.0% |
| 3669715 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.56 | 43.0 | 3.93e-01 | 80.5% | 71.2% |
| 4972484 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.55 | 30.0 | 3.30e-01 | 71.9% | 64.8% |
| 3591158 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 34.0 | 3.46e-01 | 96.9% | 64.0% |
| 3225575 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 33.0 | 3.98e-01 | 71.9% | 98.8% |
| 3565004 | 304.9.1.62 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1+RRM_3 | 0.53 | 32.0 | 2.65e-01 | 91.4% | 32.3% |
| 3742864 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 29.0 | 3.13e-01 | 71.9% | 60.9% |
D2
medium
residues 265-356
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.68 | 57.0 | 4.03e-01 | 100.0% | 28.6% |
| 3110810 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.58 | 47.0 | 3.55e-01 | 100.0% | 33.2% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.56 | 45.0 | 3.27e-01 | 90.2% | 81.4% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.53 | 45.0 | 3.03e-01 | 98.9% | 32.5% |
D3
medium
residues 357-528
Domain cluster:
rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.74 | 69.0 | 5.72e-01 | 100.0% | 68.9% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 41.0 | 5.21e-01 | 80.2% | 97.1% |
| 2bx2L02 | 3.40.1260.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain | 0.59 | 32.0 | 3.94e-01 | 73.3% | 82.7% |
| 3obyA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.58 | 34.0 | 4.26e-01 | 86.6% | 99.0% |
| 3u3gA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 36.0 | 3.95e-01 | 84.9% | 78.6% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 25.0 | 3.02e-01 | 86.6% | 71.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.81 | 76.0 | 6.34e-01 | 100.0% | 72.4% |
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.78 | 74.0 | 5.71e-01 | 100.0% | 84.8% |
| 4815223 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.77 | 73.0 | 6.77e-01 | 100.0% | 98.1% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.76 | 72.0 | 5.71e-01 | 100.0% | 67.2% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.75 | 71.0 | 5.77e-01 | 100.0% | 68.4% |
| 2988313 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.75 | 71.0 | 5.95e-01 | 100.0% | 66.5% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 69.0 | 5.83e-01 | 100.0% | 72.4% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.74 | 69.0 | 5.69e-01 | 100.0% | 98.6% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.73 | 68.0 | 5.74e-01 | 100.0% | 78.8% |
| 4873245 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.72 | 53.0 | 6.04e-01 | 77.3% | 100.0% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.72 | 67.0 | 5.65e-01 | 100.0% | 73.1% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 63.0 | 5.35e-01 | 95.3% | 96.7% |
| 4936511 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.70 | 30.0 | 3.69e-01 | 90.7% | 61.8% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.68 | 64.0 | 5.23e-01 | 100.0% | 96.0% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.66 | 61.0 | 4.89e-01 | 100.0% | 98.2% |
| 4197190 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.61 | 24.0 | 3.78e-01 | 93.6% | 100.0% |
| 3375728 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.57 | 36.0 | 3.99e-01 | 87.2% | 77.9% |
| 4966859 | 304.51.1.8 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C | 0.56 | 21.0 | 2.99e-01 | 86.6% | 70.7% |
| 4944127 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.54 | 34.0 | 4.08e-01 | 75.6% | 97.3% |
| 3916862 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 26.0 | 3.47e-01 | 79.1% | 88.9% |
| 3648114 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.51 | 22.0 | 3.05e-01 | 94.8% | 80.0% |
| 4974199 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.50 | 30.0 | 3.38e-01 | 82.6% | 73.3% |