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OQ938593.1__WIF20481.1__SEA_BERKA_17__00017

Bact-Vir

OQ938593.1__WIF20481.1__SEA_BERKA_17__00017

Identity

Accession:
OQ938593 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_Berka

TaxID: 2832316

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-134
PDB
Domain cluster: rep: NC_041949.1__YP_009603225.1__FDH66_gp61__00037__D5-161
D2 high residues 152-216
PDB
Domain cluster: rep: NC_024215.1__YP_009036901.1__GJ21_gp76__00076__D187-261
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.92 79.0 8.32e-01 93.8% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 71.0 6.96e-01 100.0% 84.3%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 68.0 7.17e-01 98.5% 100.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 68.0 6.82e-01 100.0% 87.9%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 67.0 6.98e-01 96.9% 95.0%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 55.0 5.60e-01 100.0% 73.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 72.0 7.20e-01 100.0% 95.5%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 72.0 6.21e-01 100.0% 75.8%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 57.0 6.09e-01 100.0% 89.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 6.60e-01 100.0% 90.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 55.0 5.95e-01 100.0% 94.5%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 5.67e-01 100.0% 86.7%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 62.0 5.98e-01 100.0% 83.8%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 54.0 5.40e-01 100.0% 80.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 5.72e-01 100.0% 89.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.31e-01 100.0% 76.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.83e-01 100.0% 85.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.73e-01 100.0% 90.0%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 5.69e-01 100.0% 91.2%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 4.91e-01 100.0% 61.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.73e-01 100.0% 91.5%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.84e-01 100.0% 94.7%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 43.0 5.01e-01 86.2% 90.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 56.0 5.77e-01 100.0% 90.2%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.71 56.0 3.85e-01 100.0% 26.6%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.62e-01 100.0% 85.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 54.0 5.72e-01 100.0% 93.1%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 55.0 4.84e-01 100.0% 59.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.65e-01 100.0% 86.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 53.0 5.19e-01 100.0% 77.1%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 51.0 5.36e-01 100.0% 88.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 56.0 5.40e-01 100.0% 78.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.40e-01 100.0% 87.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 53.0 5.53e-01 100.0% 91.7%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.52e-01 100.0% 88.1%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.37e-01 100.0% 88.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.65e-01 100.0% 88.9%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 33.0 3.42e-01 98.5% 56.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.13e-01 100.0% 72.0%
4amwA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 3.88e-01 98.5% 67.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.49e-01 96.9% 49.0%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.50e-01 100.0% 45.9%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.42e-01 98.5% 51.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.36e-01 100.0% 48.1%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.54e-01 98.5% 80.0%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.54e-01 93.8% 73.3%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 36.0 2.79e-01 80.0% 91.1%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.50 39.0 3.30e-01 100.0% 49.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013287 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.95 83.0 8.69e-01 95.4% 100.0%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 84.0 7.94e-01 100.0% 93.3%
3289848 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.89 82.0 7.80e-01 98.5% 94.7%
4588126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 79.0 6.96e-01 95.4% 84.3%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.88 81.0 7.35e-01 100.0% 84.7%
4303967 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 81.0 7.19e-01 100.0% 86.7%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.87 73.0 7.66e-01 98.5% 96.7%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.86 74.0 7.21e-01 100.0% 84.3%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.86 74.0 7.49e-01 100.0% 92.3%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.86 75.0 6.59e-01 100.0% 66.7%
4127826 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.85 74.0 7.42e-01 100.0% 92.3%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 71.0 7.12e-01 100.0% 89.2%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 72.0 7.14e-01 100.0% 88.1%
3700872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 79.0 7.11e-01 100.0% 80.0%
3700747 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 78.0 6.91e-01 100.0% 84.4%
4537356 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 70.0 7.26e-01 95.4% 95.0%
3708517 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 79.0 6.02e-01 100.0% 50.4%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 72.0 6.79e-01 100.0% 78.7%
3988893 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.84 74.0 7.01e-01 98.5% 81.3%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 71.0 6.90e-01 100.0% 81.9%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 72.0 5.97e-01 100.0% 56.2%
4009391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 74.0 6.89e-01 100.0% 77.5%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 70.0 6.86e-01 98.5% 82.9%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 69.0 7.21e-01 96.9% 95.0%
3700744 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 77.0 6.55e-01 100.0% 93.0%
3715828 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 77.0 7.12e-01 100.0% 87.5%
2410170 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 69.0 6.99e-01 100.0% 92.1%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.82 65.0 6.57e-01 100.0% 84.6%
4032300 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.82 76.0 6.75e-01 100.0% 83.3%
4427420 4.1.1.436 ↗ beta barrels › SH3 › SH3 › SH3 › PF29249 0.82 72.0 6.71e-01 100.0% 77.5%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 68.0 6.89e-01 98.5% 89.2%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.82 68.0 6.44e-01 100.0% 76.3%
3579483 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 75.0 6.83e-01 100.0% 97.6%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 68.0 6.62e-01 100.0% 82.9%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 74.0 7.25e-01 100.0% 92.9%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 66.0 6.69e-01 100.0% 89.2%
3838574 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 63.0 6.83e-01 95.4% 100.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 73.0 6.37e-01 100.0% 70.5%
1905739 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.79 73.0 6.56e-01 100.0% 87.2%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 72.0 7.13e-01 100.0% 94.1%
3385856 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 65.0 6.66e-01 100.0% 92.1%
4091533 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.78 68.0 6.69e-01 100.0% 88.6%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 72.0 6.16e-01 100.0% 74.0%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 64.0 6.43e-01 100.0% 89.2%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 71.0 7.14e-01 100.0% 98.5%
4185893 4.1.1.394 ↗ beta barrels › SH3 › SH3 › SH3 › SlpA 0.77 69.0 6.95e-01 100.0% 96.9%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.60e-01 100.0% 84.0%
3718657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.84e-01 98.5% 95.2%
4340107 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 70.0 6.65e-01 100.0% 92.0%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 68.0 6.36e-01 100.0% 85.0%
4291404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 67.0 6.41e-01 100.0% 85.3%
2581331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.03e-01 100.0% 84.0%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 56.0 5.45e-01 100.0% 77.1%
166904 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 56.0 5.58e-01 100.0% 83.3%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 55.0 4.55e-01 100.0% 49.1%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.76e-01 100.0% 85.1%
4335022 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.17e-01 100.0% 66.3%
3869065 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 58.0 5.02e-01 100.0% 63.0%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 53.0 5.24e-01 100.0% 82.9%
3614465 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.26e-01 100.0% 51.2%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 57.0 5.35e-01 100.0% 90.0%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.63 47.0 4.01e-01 100.0% 49.5%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.61 53.0 4.75e-01 100.0% 71.6%
3585452 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.61 52.0 5.12e-01 100.0% 87.1%
3591210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.66e-01 96.9% 95.6%
3757490 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 48.0 4.29e-01 100.0% 69.5%
3175878 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.05e-01 98.5% 32.3%
4620869 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.54 39.0 2.52e-01 80.0% 83.5%
3536412 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.47e-01 96.9% 57.9%