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OQ939939.1__WKV24278.1__X__00027

Bact-Vir

OQ939939.1__WKV24278.1__X__00027

Identity

Accession:
OQ939939 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Escherichia_phage_SUT_E1620

TaxID: 3061294

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-94
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 40.0 3.41e-01 100.0% 36.3%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 40.0 3.37e-01 100.0% 35.9%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 52.0 3.44e-01 83.1% 24.9%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.66 34.0 3.53e-01 95.5% 51.2%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.65 49.0 4.07e-01 100.0% 46.1%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 40.0 3.31e-01 95.5% 37.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 36.0 3.23e-01 100.0% 38.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 41.0 3.86e-01 100.0% 56.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 40.0 3.68e-01 100.0% 55.5%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 36.0 3.78e-01 80.9% 67.5%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.59 40.0 2.96e-01 100.0% 26.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.57 33.0 3.86e-01 97.8% 83.3%
3optA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.56 45.0 3.18e-01 88.8% 90.7%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.55 37.0 3.14e-01 100.0% 40.1%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 45.0 3.44e-01 95.5% 89.0%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.17e-01 100.0% 33.8%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 33.0 3.18e-01 100.0% 52.4%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 46.0 3.48e-01 98.9% 92.8%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 46.0 3.44e-01 98.9% 90.3%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.84e-01 96.6% 25.4%
2d0bA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 3.06e-01 85.4% 53.0%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.28e-01 98.9% 64.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2466103 265.1.1.2 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.69 37.0 3.29e-01 98.9% 35.9%
224086 9.18.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.65 49.0 4.07e-01 100.0% 46.1%
3326913 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.63 35.0 2.52e-01 96.6% 18.5%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.63 48.0 3.19e-01 80.9% 25.0%
4033933 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.63 37.0 3.39e-01 100.0% 45.2%
4949068 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.62 34.0 3.20e-01 84.3% 43.6%
3709124 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.60 46.0 2.85e-01 82.0% 16.4%
3664762 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 46.0 3.65e-01 100.0% 41.7%
3639350 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.59 48.0 4.12e-01 87.6% 94.2%
3276021 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.58 44.0 2.73e-01 82.0% 17.6%
3974774 897.2.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E 0.57 44.0 3.85e-01 100.0% 55.4%
3827592 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.57 36.0 3.01e-01 100.0% 36.1%
3451883 331.3.1.40 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 0.57 44.0 3.40e-01 100.0% 37.4%
4178727 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 37.0 2.76e-01 88.8% 26.7%
5076441 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 46.0 3.39e-01 93.3% 51.5%
4310932 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 48.0 3.56e-01 100.0% 51.8%
4065140 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 47.0 3.44e-01 98.9% 48.0%
3413472 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 45.0 3.44e-01 94.4% 75.7%
4936297 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.54 39.0 3.24e-01 77.5% 86.3%
3575810 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.54 41.0 3.35e-01 100.0% 42.9%
3801679 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 3.03e-01 88.8% 30.0%
3633830 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.53 37.0 3.41e-01 73.0% 87.5%
3505004 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 42.0 4.25e-01 95.5% 84.4%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.35e-01 83.1% 52.9%
1106822 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 44.0 3.31e-01 97.8% 89.9%
4640212 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.50 44.0 3.08e-01 98.9% 53.7%
4583096 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.50 43.0 3.26e-01 97.8% 86.7%
3303879 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.50 42.0 3.13e-01 94.4% 55.4%
3598070 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.20e-01 73.0% 86.7%