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OQ957557.1__WKV24428.1__X__00019
Bact-VirOQ957557.1__WKV24428.1__X__00019
Identity
- Accession:
- OQ957557 ↗
- Kingdom:
- phage
Quality
75.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-109
Domain cluster:
rep: MK387309.1__QAY18001.1__X__00047__D41-70_94-140
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.71 | 65.0 | 6.07e-01 | 100.0% | 90.1% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.70 | 64.0 | 6.19e-01 | 100.0% | 92.5% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 62.0 | 5.70e-01 | 100.0% | 86.5% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 63.0 | 5.91e-01 | 100.0% | 85.9% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 62.0 | 5.83e-01 | 100.0% | 88.4% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 62.0 | 5.89e-01 | 100.0% | 86.3% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 62.0 | 6.12e-01 | 100.0% | 96.5% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 61.0 | 5.87e-01 | 100.0% | 88.6% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 61.0 | 4.72e-01 | 100.0% | 47.5% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 61.0 | 5.89e-01 | 100.0% | 87.7% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.68 | 61.0 | 5.90e-01 | 100.0% | 90.0% |
| 2avtB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.67 | 61.0 | 5.19e-01 | 100.0% | 64.5% |
| 1sxjH02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.67 | 61.0 | 5.75e-01 | 100.0% | 94.5% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.67 | 61.0 | 4.65e-01 | 100.0% | 44.5% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.67 | 60.0 | 4.56e-01 | 100.0% | 45.4% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.66 | 59.0 | 4.48e-01 | 100.0% | 46.7% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.61 | 55.0 | 4.30e-01 | 100.0% | 48.2% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 32.0 | 4.07e-01 | 96.3% | 94.8% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 26.0 | 3.43e-01 | 95.3% | 78.2% |
| 6ro0B01 | 3.10.40.10 | Alpha Beta › Roll › Pertussis Toxin; Chain B, domain 1 › Aerolysin/Pertussis toxin (APT), N-terminal domain | 0.54 | 25.0 | 2.78e-01 | 80.4% | 52.3% |
| 2k8qA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.06e-01 | 79.4% | 50.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995742 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.71 | 61.0 | 6.12e-01 | 100.0% | 90.9% |
| 4460660 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.70 | 64.0 | 5.93e-01 | 100.0% | 87.4% |
| 2476832 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.70 | 64.0 | 5.90e-01 | 100.0% | 85.9% |
| 3615429 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.70 | 26.0 | 3.80e-01 | 91.6% | 74.0% |
| 3945544 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.70 | 26.0 | 3.57e-01 | 86.0% | 65.0% |
| 4033267 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.69 | 26.0 | 3.54e-01 | 86.0% | 65.0% |
| 158230 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.69 | 62.0 | 5.87e-01 | 100.0% | 91.3% |
| 1290662 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.69 | 62.0 | 5.66e-01 | 100.0% | 82.5% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.69 | 62.0 | 5.85e-01 | 100.0% | 86.2% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.68 | 62.0 | 5.99e-01 | 100.0% | 90.8% |
| 3259583 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.68 | 33.0 | 3.83e-01 | 100.0% | 63.7% |
| 3281112 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.68 | 61.0 | 5.95e-01 | 100.0% | 91.7% |
| 2522057 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.68 | 62.0 | 5.93e-01 | 100.0% | 88.6% |
| 3436556 | 220.1.1.86 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N | 0.68 | 33.0 | 3.92e-01 | 100.0% | 68.0% |
| 3388280 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.67 | 60.0 | 5.82e-01 | 100.0% | 88.3% |
| 5056758 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.66 | 59.0 | 5.78e-01 | 99.1% | 93.9% |
| 4057937 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.65 | 58.0 | 5.45e-01 | 100.0% | 86.6% |
| 3369784 | 809.1.1.5 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 | 0.61 | 27.0 | 3.08e-01 | 100.0% | 54.2% |
| 5013774 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.52 | 44.0 | 3.79e-01 | 93.5% | 77.7% |
| None | — | 0.52 | 40.0 | 2.48e-01 | 84.1% | 27.9% | |
| 3980107 | 5.1.3.18 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SdiA-regulated | 0.51 | 40.0 | 3.24e-01 | 89.7% | 84.1% |
| 4948950 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 37.0 | 3.86e-01 | 88.8% | 83.8% |
| 7311 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.50 | 29.0 | 3.48e-01 | 95.3% | 92.2% |
| 3517016 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 39.0 | 2.85e-01 | 85.0% | 70.0% |
D2
high
residues 137-184