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OQ970155.1__WKW88852.1__LSL4_gp1c__00001
Bact-VirOQ970155.1__WKW88852.1__LSL4_gp1c__00001
Identity
- Accession:
- OQ970155 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Nankokuvirus›
Pseudomonas_phage_LSL4
TaxID: 3061297
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-81_100-161
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k9tA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 44.0 | 5.05e-01 | 86.6% | 93.9% |
| 1w07A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.66 | 34.0 | 3.17e-01 | 88.7% | 40.5% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 40.0 | 4.71e-01 | 75.3% | 96.8% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 44.0 | 4.45e-01 | 93.8% | 73.4% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.63 | 46.0 | 4.49e-01 | 77.3% | 99.1% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 48.0 | 4.01e-01 | 82.5% | 58.4% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.61 | 43.0 | 4.72e-01 | 79.4% | 94.7% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 40.0 | 4.70e-01 | 85.6% | 100.0% |
| 1g3nC01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 45.0 | 4.23e-01 | 86.6% | 65.0% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 4.12e-01 | 87.6% | 78.8% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 47.0 | 4.18e-01 | 87.6% | 83.8% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 4.40e-01 | 81.4% | 84.7% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.57 | 36.0 | 4.26e-01 | 72.2% | 92.5% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 4.10e-01 | 73.2% | 80.6% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 4.08e-01 | 73.2% | 88.9% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.02e-01 | 86.6% | 85.7% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.13e-01 | 89.7% | 80.3% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.21e-01 | 89.7% | 90.3% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 41.0 | 3.07e-01 | 78.4% | 93.8% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.03e-01 | 86.6% | 82.3% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.55 | 34.0 | 3.71e-01 | 100.0% | 76.6% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 43.0 | 3.53e-01 | 87.6% | 63.7% |
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.54 | 48.0 | 4.40e-01 | 99.0% | 85.8% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.13e-01 | 76.3% | 94.2% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 39.0 | 3.95e-01 | 76.3% | 100.0% |
| 4pl0A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.86e-01 | 91.8% | 29.5% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.74e-01 | 86.6% | 81.3% |
| 1hwyA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 43.0 | 3.11e-01 | 91.8% | 60.7% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 42.0 | 3.48e-01 | 90.7% | 87.9% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.52 | 43.0 | 3.82e-01 | 91.8% | 98.6% |
| 1gveB00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.51 | 44.0 | 3.20e-01 | 97.9% | 44.9% |
| 3rkoG00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.76e-01 | 91.8% | 74.0% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 4.14e-01 | 92.8% | 97.5% |
| 1w98B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 40.0 | 3.57e-01 | 89.7% | 63.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3392384 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 48.0 | 5.31e-01 | 77.3% | 100.0% |
| 3270068 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 52.0 | 5.49e-01 | 93.8% | 98.8% |
| 5040184 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 47.0 | 5.10e-01 | 77.3% | 100.0% |
| 1145756 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.64 | 38.0 | 3.60e-01 | 83.5% | 48.7% |
| 4949723 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 44.0 | 5.04e-01 | 73.2% | 100.0% |
| 5019927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 4.95e-01 | 84.5% | 96.9% |
| 5009653 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 41.0 | 4.79e-01 | 95.9% | 100.0% |
| 3711347 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.62 | 48.0 | 4.23e-01 | 81.4% | 64.3% |
| 3204144 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.61 | 45.0 | 4.09e-01 | 81.4% | 57.7% |
| 3289932 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.61 | 48.0 | 4.31e-01 | 86.6% | 85.0% |
| 3972373 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 52.0 | 4.26e-01 | 92.8% | 53.1% |
| 3739600 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.61 | 50.0 | 3.93e-01 | 89.7% | 90.2% |
| 4217329 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.59 | 45.0 | 4.19e-01 | 82.5% | 64.2% |
| 4675401 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 44.0 | 3.92e-01 | 90.7% | 53.3% |
| 4084282 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.58 | 43.0 | 4.51e-01 | 89.7% | 88.2% |
| 5009661 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.58 | 47.0 | 4.14e-01 | 86.6% | 82.9% |
| 5029842 | 101.1.2.645 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_40 | 0.58 | 41.0 | 4.06e-01 | 74.2% | 80.0% |
| 3227569 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 45.0 | 3.93e-01 | 83.5% | 54.0% |
| 3595356 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.57 | 45.0 | 4.11e-01 | 83.5% | 64.0% |
| 4131842 | 101.1.3.25 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r3 | 0.57 | 39.0 | 4.27e-01 | 73.2% | 90.7% |
| 3695966 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.56 | 45.0 | 3.65e-01 | 89.7% | 79.5% |
| 4014826 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 46.0 | 3.81e-01 | 94.8% | 55.3% |
| 4458444 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.55 | 41.0 | 4.14e-01 | 77.3% | 78.9% |
| 3692580 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 40.0 | 3.13e-01 | 79.4% | 93.3% |
| 4072992 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.53 | 41.0 | 3.08e-01 | 85.6% | 94.5% |
| 3284489 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.53 | 44.0 | 3.45e-01 | 93.8% | 90.0% |
| 3234312 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.53 | 45.0 | 3.09e-01 | 95.9% | 70.5% |
| 3253586 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 43.0 | 3.80e-01 | 93.8% | 61.4% |
| 3718570 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 42.0 | 3.95e-01 | 94.8% | 71.2% |
| 3191120 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 43.0 | 3.55e-01 | 94.8% | 89.2% |
| 3729348 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 43.0 | 3.68e-01 | 94.8% | 54.1% |
| 3716640 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 43.0 | 3.51e-01 | 93.8% | 85.3% |
| 4021491 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 42.0 | 3.50e-01 | 94.8% | 49.4% |
| 3634574 | 101.1.10.2 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 | 0.51 | 42.0 | 3.10e-01 | 88.7% | 36.9% |
| 3701878 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.51 | 43.0 | 3.59e-01 | 93.8% | 90.3% |
| 3173775 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.51 | 43.0 | 3.50e-01 | 94.8% | 87.2% |
| 3254469 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.51 | 43.0 | 3.60e-01 | 95.9% | 52.2% |
| 3676572 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.51 | 39.0 | 3.22e-01 | 82.5% | 65.7% |
| 3600385 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 42.0 | 3.36e-01 | 95.9% | 83.6% |
| 3285599 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.50 | 40.0 | 3.61e-01 | 88.7% | 82.9% |