←Back to structures
OQ970155.1__WKW88930.1__LSL4_gp79__00079
Bact-VirOQ970155.1__WKW88930.1__LSL4_gp79__00079
Identity
- Accession:
- OQ970155 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Nankokuvirus›
Pseudomonas_phage_LSL4
TaxID: 3061297
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-52
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d3yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 51.0 | 4.42e-01 | 76.6% | 47.9% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.71 | 59.0 | 5.93e-01 | 100.0% | 97.9% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.67 | 54.0 | 5.43e-01 | 100.0% | 97.9% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.66 | 57.0 | 3.96e-01 | 100.0% | 47.0% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.66 | 47.0 | 4.78e-01 | 76.6% | 80.0% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.64 | 52.0 | 4.43e-01 | 100.0% | 71.6% |
| 1x93A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.64 | 37.0 | 4.15e-01 | 95.7% | 77.1% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 47.0 | 4.51e-01 | 100.0% | 74.6% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.59 | 49.0 | 4.57e-01 | 89.4% | 87.9% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 43.0 | 3.32e-01 | 85.1% | 46.3% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.57 | 44.0 | 4.33e-01 | 95.7% | 83.6% |
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 46.0 | 4.05e-01 | 100.0% | 63.0% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.56 | 47.0 | 3.88e-01 | 95.7% | 67.1% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.44e-01 | 100.0% | 44.3% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.52e-01 | 93.6% | 100.0% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.53 | 42.0 | 3.45e-01 | 95.7% | 47.0% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 40.0 | 3.10e-01 | 97.9% | 87.0% |
| 2vsqA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 40.0 | 2.64e-01 | 95.7% | 73.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008115 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.74 | 40.0 | 4.12e-01 | 100.0% | 55.6% |
| 3174920 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 51.0 | 4.20e-01 | 76.6% | 42.4% |
| 4930909 | 101.29.1.0 ↗ | alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like | 0.65 | 40.0 | 3.78e-01 | 100.0% | 52.7% |
| 4369740 | 132.3.1.0 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ | 0.54 | 38.0 | 3.53e-01 | 100.0% | 56.9% |
| 5052276 | 129.1.1.11 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C | 0.53 | 43.0 | 3.36e-01 | 100.0% | 92.5% |