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OQ970155.1__WKW88958.1__LSL4_gp107__00107

Bact-Vir

OQ970155.1__WKW88958.1__LSL4_gp107__00107

Identity

Accession:
OQ970155 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_LSL4

TaxID: 3061297

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 51.0 3.76e-01 85.5% 32.7%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 43.0 4.21e-01 80.6% 64.2%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.60 41.0 4.04e-01 72.6% 70.1%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 40.0 3.75e-01 71.0% 68.4%
1i1gA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.59 42.0 4.02e-01 80.6% 63.6%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 39.0 3.68e-01 71.0% 67.5%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 41.0 3.28e-01 80.6% 47.8%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 41.0 3.47e-01 80.6% 50.5%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 36.0 3.46e-01 72.6% 66.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3720045 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 50.0 4.49e-01 85.5% 60.0%
4297519 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.65 49.0 4.67e-01 82.3% 85.1%
3282995 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 41.0 2.93e-01 72.6% 69.0%
3214492 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 43.0 4.19e-01 80.6% 74.3%
4953653 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 43.0 4.07e-01 80.6% 73.3%
4185338 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 41.0 3.86e-01 80.6% 77.5%
3385783 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 42.0 4.18e-01 82.3% 78.5%
4649590 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 47.0 3.88e-01 100.0% 77.5%
3449952 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 36.0 3.28e-01 72.6% 55.6%
3611291 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.52 43.0 3.34e-01 98.4% 74.8%
3837087 387.1.5.15 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP 0.51 35.0 3.76e-01 74.2% 96.0%