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OQ970155.1__WKW88960.1__LSL4_gp109__00109

Bact-Vir

OQ970155.1__WKW88960.1__LSL4_gp109__00109

Identity

Accession:
OQ970155 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_LSL4

TaxID: 3061297

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50_110-132
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cecB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 41.0 2.98e-01 76.7% 69.4%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 39.0 3.18e-01 78.1% 94.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3421723 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.53 43.0 3.21e-01 87.7% 35.6%
3692118 109.40.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain 0.50 41.0 3.35e-01 98.6% 69.7%
3875311 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.50 40.0 2.64e-01 86.3% 38.7%
D2 medium residues 51-109
PDB
Domain cluster: rep: ON045087.1__UPU15926.1__X__00100__D5-77
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.73 49.0 3.52e-01 83.1% 24.8%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.62 50.0 4.63e-01 93.2% 71.8%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 52.0 3.82e-01 98.3% 69.0%
1t9hA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.58 44.0 4.16e-01 79.7% 77.9%
2itaA01 1.20.5.920 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein 0.58 37.0 3.80e-01 89.8% 67.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.50e-01 100.0% 83.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 52.0 4.00e-01 100.0% 60.5%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 2.88e-01 91.5% 39.0%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 46.0 3.13e-01 91.5% 27.1%
5gj7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 47.0 3.56e-01 98.3% 67.5%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 50.0 3.64e-01 100.0% 53.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.29e-01 89.8% 64.3%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 41.0 2.89e-01 96.6% 28.6%
3dupA02 3.30.750.160 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.51 42.0 3.46e-01 89.8% 57.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.75e-01 96.6% 96.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4253727 109.4.1.835 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INT10 0.77 49.0 2.91e-01 86.4% 9.4%
3517430 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 57.0 5.47e-01 79.7% 76.9%
4590268 592.2.1.14 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF3181 0.68 51.0 4.46e-01 88.1% 51.6%
3938199 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 51.0 3.54e-01 93.2% 27.4%
3187789 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.65 49.0 3.08e-01 83.1% 84.2%
4600241 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.64 47.0 3.25e-01 78.0% 59.6%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 51.0 4.22e-01 100.0% 53.0%
3214883 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 54.0 3.86e-01 96.6% 61.9%
3741919 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 54.0 4.46e-01 100.0% 57.0%
3240607 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 29.0 3.43e-01 71.2% 62.5%
3947798 304.8.1.70 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.59 47.0 2.98e-01 93.2% 17.9%
4282776 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.58 47.0 3.87e-01 98.3% 52.0%
4958049 4204.1.1.5 ↗ alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 0.58 47.0 3.79e-01 88.1% 97.3%
3349750 3567.1.1.75 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA 0.58 49.0 3.35e-01 94.9% 42.4%
3570157 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.58 45.0 3.86e-01 83.1% 54.4%
3920013 633.6.1.8 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.56 48.0 3.42e-01 98.3% 58.9%
3268551 5054.1.1.71 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PTPLA 0.55 49.0 3.29e-01 98.3% 40.5%
4928588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.65e-01 94.9% 62.5%
4011519 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 43.0 4.36e-01 86.4% 86.7%
4146516 4033.1.1.3 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › HpaB_N 0.53 43.0 3.37e-01 96.6% 44.1%
4969797 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.51 43.0 3.43e-01 91.5% 65.2%