←Back to structures

OQ970155.1__WKW88964.1__LSL4_gp113__00113

Bact-Vir

OQ970155.1__WKW88964.1__LSL4_gp113__00113

Identity

Accession:
OQ970155 ↗
Kingdom:
phage

Quality

59.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_LSL4

TaxID: 3061297

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-85_110-129
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.90 55.0 6.61e-01 71.1% 92.2%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.88 61.0 6.81e-01 71.1% 93.3%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.83 57.0 4.26e-01 71.1% 32.0%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 57.0 3.98e-01 72.4% 41.9%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 56.0 5.19e-01 71.1% 68.1%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.81 55.0 4.54e-01 71.1% 69.2%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.79 56.0 4.92e-01 73.7% 60.2%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.79 56.0 4.89e-01 73.7% 57.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 53.0 5.13e-01 71.1% 63.2%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.76 54.0 4.31e-01 73.7% 57.4%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.73 51.0 5.48e-01 72.4% 86.2%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.70 49.0 4.11e-01 73.7% 85.5%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 60.0 4.64e-01 97.4% 50.9%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 45.0 4.28e-01 71.1% 61.8%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 57.0 3.83e-01 96.1% 73.8%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 50.0 4.83e-01 84.2% 88.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030059 3903.1.1.0 ↗ alpha duplicates or obligate multimers › Reticulocyte binding protein 5 › Reticulocyte binding protein 5 › Reticulocyte binding protein 5 0.91 65.0 4.23e-01 73.7% 20.0%
3576710 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.91 64.0 6.10e-01 72.4% 67.1%
4546876 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.89 61.0 6.03e-01 71.1% 70.0%
3433708 192.29.1.217 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › MCAfunc 0.87 61.0 5.46e-01 72.4% 70.0%
4998774 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.86 60.0 3.53e-01 71.1% 11.8%
3926919 3710.1.1.0 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain 0.85 58.0 6.49e-01 71.1% 100.0%
3628140 3826.1.1.43 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Med14 0.83 57.0 4.98e-01 72.4% 49.1%
3915818 4207.1.1.35 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med14 0.83 58.0 5.24e-01 73.7% 55.0%
3390932 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 57.0 5.34e-01 72.4% 60.0%
3927285 1008.1.1.51 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Med14 0.82 58.0 4.94e-01 73.7% 47.8%
4650373 604.1.1.169 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Med14 0.82 58.0 5.11e-01 73.7% 52.4%
3506234 5043.1.1.15 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Med14 0.82 56.0 5.00e-01 72.4% 51.4%
3474600 4207.1.2.48 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med14 0.82 56.0 5.10e-01 72.4% 54.0%
3850093 4099.1.1.11 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 0.82 57.0 5.18e-01 73.7% 55.0%
4039421 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.82 58.0 5.24e-01 73.7% 69.0%
3548646 604.6.1.52 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Med14 0.81 57.0 5.16e-01 73.7% 55.0%
4386557 622.1.1.29 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Med14 0.81 57.0 5.25e-01 73.7% 57.9%
4049273 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.81 57.0 5.96e-01 73.7% 94.3%
3595877 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.80 55.0 4.66e-01 71.1% 45.0%
4832964 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.80 55.0 4.60e-01 71.1% 43.9%
4479100 192.29.1.244 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CHD5 0.79 56.0 4.99e-01 73.7% 67.6%
3638319 192.7.1.56 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CHD5 0.74 52.0 4.79e-01 73.7% 71.0%
3744786 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.74 52.0 4.84e-01 73.7% 67.4%
4476610 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.72 50.0 4.55e-01 72.4% 61.0%
4128596 3710.1.1.1 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.71 49.0 5.18e-01 72.4% 98.5%