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OQ970155.1__WKW88996.1__LSL4_gp145__00145

Bact-Vir

OQ970155.1__WKW88996.1__LSL4_gp145__00145

Identity

Accession:
OQ970155 ↗
Kingdom:
phage

Quality

64.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_LSL4

TaxID: 3061297

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
D2 high residues 110-172
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.68 50.0 3.47e-01 81.0% 34.2%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.65 48.0 3.56e-01 81.0% 94.8%
3g8qA01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 46.0 3.83e-01 100.0% 46.0%
2e5vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 41.0 2.72e-01 71.4% 60.6%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.42e-01 81.0% 86.4%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 40.0 2.70e-01 71.4% 61.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.43e-01 82.5% 93.9%
5uaoC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 2.39e-01 73.0% 35.2%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 39.0 2.59e-01 71.4% 58.1%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 39.0 2.58e-01 73.0% 39.1%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.10e-01 81.0% 89.8%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.56 41.0 3.16e-01 79.4% 40.1%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.55 39.0 3.40e-01 76.2% 83.7%
2oluA01 3.90.1310.20 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.55 39.0 3.42e-01 76.2% 89.9%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.54 44.0 3.75e-01 88.9% 98.0%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 2.69e-01 81.0% 73.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 42.0 3.51e-01 92.1% 69.0%
2vh2A02 3.40.50.11690 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB 0.54 42.0 3.44e-01 90.5% 55.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.24e-01 74.6% 49.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.64e-01 73.0% 78.8%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 37.0 3.74e-01 79.4% 93.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 37.0 4.08e-01 95.2% 100.0%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.52 42.0 3.28e-01 96.8% 76.6%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.51 37.0 3.52e-01 81.0% 65.3%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.54e-01 82.5% 81.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.60e-01 79.4% 72.5%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.50 37.0 3.10e-01 79.4% 56.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.69 53.0 4.24e-01 82.5% 60.8%
2162624 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.68 50.0 4.03e-01 79.4% 58.7%
3479475 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 49.0 3.34e-01 77.8% 47.9%
3486058 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 47.0 3.14e-01 74.6% 43.1%
3676320 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 3.89e-01 82.5% 57.4%
4529966 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 51.0 3.26e-01 93.7% 22.1%
3595059 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 43.0 3.42e-01 74.6% 81.5%
4274162 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.61 51.0 3.43e-01 98.4% 93.9%
4010995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.29e-01 81.0% 88.0%
3214083 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 44.0 3.41e-01 81.0% 60.0%
3455699 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.59 44.0 4.10e-01 82.5% 69.9%
4110683 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 42.0 3.02e-01 76.2% 72.4%
3680084 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.58 43.0 4.16e-01 82.5% 76.0%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.02e-01 77.8% 70.8%
3995338 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 43.0 3.30e-01 82.5% 59.4%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.57 41.0 4.28e-01 77.8% 91.5%
2625961 3363.1.1.1 ↗ beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › ToxB_N 0.57 42.0 4.12e-01 81.0% 86.8%
1162187 233.1.1.8 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.57 42.0 3.09e-01 79.4% 36.7%
4988402 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.56 38.0 3.61e-01 71.4% 98.8%
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.56 43.0 3.26e-01 84.1% 38.7%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.56 40.0 3.70e-01 77.8% 57.6%
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.56 38.0 3.91e-01 79.4% 75.0%
5029363 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 40.0 4.16e-01 81.0% 85.0%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.02e-01 81.0% 83.6%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 38.0 4.15e-01 74.6% 94.0%
5037233 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 40.0 3.09e-01 82.5% 57.5%
3989898 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.73e-01 73.0% 73.8%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.53 38.0 3.99e-01 76.2% 96.4%
5061065 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.53 37.0 3.91e-01 81.0% 87.3%
4483985 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.53 37.0 3.38e-01 74.6% 85.6%
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.53 40.0 4.03e-01 82.5% 83.1%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 37.0 3.89e-01 76.2% 96.4%
1563361 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.52 38.0 2.45e-01 77.8% 62.0%
3582902 5.1.10.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.52 43.0 3.51e-01 93.7% 59.2%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 35.0 3.02e-01 96.8% 42.7%
4031958 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 39.0 2.82e-01 82.5% 54.2%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 38.0 3.62e-01 79.4% 74.7%
3231485 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 37.0 2.92e-01 81.0% 54.4%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.51 35.0 3.57e-01 84.1% 77.6%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 36.0 3.44e-01 74.6% 65.3%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.51 36.0 3.65e-01 81.0% 73.8%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.51 36.0 3.61e-01 74.6% 76.9%
3570911 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.51 40.0 2.64e-01 95.2% 81.4%
2754026 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.51 37.0 2.43e-01 77.8% 30.1%
4934442 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.51 40.0 3.14e-01 90.5% 76.7%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 35.0 3.55e-01 76.2% 72.3%
1117604 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.51 37.0 2.79e-01 77.8% 53.5%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.51 38.0 3.91e-01 82.5% 90.0%
3941962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 37.0 3.38e-01 81.0% 56.7%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.50 35.0 3.73e-01 76.2% 92.7%
1114176 79.1.1.2 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 0.50 37.0 2.39e-01 77.8% 30.1%
D3 medium residues 195-291
PDB
Domain cluster: rep: ON712643.1__UTC25281.1__P7_091__00091__D8-102
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 44.0 4.40e-01 74.2% 58.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.68 39.0 4.80e-01 71.1% 91.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.78e-01 94.8% 72.2%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.44e-01 94.8% 72.9%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.59 28.0 3.13e-01 75.3% 55.3%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.28e-01 94.8% 74.1%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 40.0 4.25e-01 73.2% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.32e-01 93.8% 79.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 46.0 3.97e-01 87.6% 77.9%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 34.0 2.30e-01 70.1% 40.8%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.06e-01 85.6% 97.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 49.0 5.09e-01 78.4% 64.4%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 51.0 5.94e-01 78.4% 92.9%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 49.0 4.61e-01 75.3% 53.9%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 46.0 4.38e-01 74.2% 51.3%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 46.0 4.62e-01 74.2% 60.0%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 43.0 5.33e-01 70.1% 93.2%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 49.0 5.06e-01 78.4% 71.1%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 47.0 4.59e-01 74.2% 58.1%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 43.0 5.36e-01 71.1% 93.3%
4055974 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.74 50.0 4.57e-01 71.1% 53.6%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 47.0 5.33e-01 75.3% 84.0%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 48.0 4.92e-01 75.3% 68.4%
3393358 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 48.0 4.86e-01 78.4% 67.4%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 47.0 5.23e-01 76.3% 84.0%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.31e-01 74.2% 53.3%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 45.0 5.19e-01 100.0% 88.6%
4484893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 5.19e-01 99.0% 93.8%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.70 47.0 4.51e-01 71.1% 60.0%
4427477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 4.67e-01 74.2% 68.4%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.68e-01 71.1% 71.1%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 48.0 4.82e-01 72.2% 70.0%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.66 43.0 4.95e-01 73.2% 91.4%
3706223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 3.76e-01 70.1% 52.4%
3203654 601.16.1.12 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.60 54.0 4.26e-01 100.0% 95.0%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 53.0 4.43e-01 100.0% 88.5%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.56 38.0 4.18e-01 74.2% 90.7%
3622425 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 49.0 4.59e-01 100.0% 93.3%
3721364 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.50 36.0 3.50e-01 77.3% 70.4%