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OQ992554.1__WNV48873.1__X__00124
Bact-VirOQ992554.1__WNV48873.1__X__00124
Identity
- Accession:
- OQ992554 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Taxonomy
TaxID: 3046817
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dckA00 | 1.10.1200.30 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain | 0.82 | 60.0 | 5.32e-01 | 76.9% | 59.2% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.81 | 74.0 | 5.64e-01 | 100.0% | 48.6% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.79 | 68.0 | 5.06e-01 | 94.2% | 80.8% |
| 3udcA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 71.0 | 5.43e-01 | 100.0% | 47.8% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.79 | 60.0 | 4.27e-01 | 86.5% | 28.5% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.78 | 61.0 | 3.76e-01 | 90.4% | 15.3% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 58.0 | 4.92e-01 | 80.8% | 88.1% |
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.77 | 57.0 | 5.05e-01 | 80.8% | 55.4% |
| 3craA02 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.77 | 55.0 | 4.03e-01 | 75.0% | 32.0% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.77 | 70.0 | 4.59e-01 | 100.0% | 37.1% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.76 | 54.0 | 5.84e-01 | 82.7% | 97.6% |
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.76 | 69.0 | 5.37e-01 | 100.0% | 50.9% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.76 | 63.0 | 4.78e-01 | 92.3% | 40.5% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 60.0 | 5.31e-01 | 86.5% | 67.1% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.74 | 61.0 | 4.53e-01 | 90.4% | 72.7% |
| 5hn9C00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.74 | 66.0 | 3.99e-01 | 100.0% | 23.7% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 63.0 | 5.11e-01 | 98.1% | 52.0% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.74 | 65.0 | 5.10e-01 | 98.1% | 49.1% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.73 | 57.0 | 4.27e-01 | 94.2% | 33.3% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.73 | 57.0 | 4.85e-01 | 86.5% | 52.3% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.70 | 56.0 | 4.87e-01 | 86.5% | 69.2% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.70 | 48.0 | 4.85e-01 | 82.7% | 71.7% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.70 | 56.0 | 3.62e-01 | 86.5% | 48.2% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.70 | 58.0 | 3.51e-01 | 100.0% | 26.9% |
| 2oh3A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 58.0 | 4.20e-01 | 100.0% | 34.0% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.68 | 58.0 | 3.74e-01 | 100.0% | 28.4% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 61.0 | 5.35e-01 | 100.0% | 71.4% |
| 2v6eA01 | 1.10.287.3180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 54.0 | 4.89e-01 | 96.2% | 65.3% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 56.0 | 4.53e-01 | 96.2% | 53.5% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 58.0 | 5.48e-01 | 100.0% | 82.3% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.65 | 47.0 | 4.35e-01 | 84.6% | 58.3% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.65 | 51.0 | 3.54e-01 | 86.5% | 55.9% |
| 4jrfA03 | 1.10.20.150 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.63 | 54.0 | 4.19e-01 | 92.3% | 52.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.62 | 48.0 | 4.82e-01 | 98.1% | 84.6% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.61 | 48.0 | 4.10e-01 | 92.3% | 78.9% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 53.0 | 4.75e-01 | 100.0% | 78.9% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.61 | 55.0 | 4.75e-01 | 96.2% | 68.4% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 45.0 | 4.22e-01 | 80.8% | 75.8% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.59 | 48.0 | 4.18e-01 | 92.3% | 72.0% |
| 3tosA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 39.0 | 2.56e-01 | 73.1% | 15.5% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.57 | 43.0 | 3.64e-01 | 86.5% | 49.0% |
| 1udxA03 | 3.30.300.350 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › GTP-binding protein OBG, C-terminal domain | 0.55 | 43.0 | 3.83e-01 | 86.5% | 64.9% |
| 4pdyA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 40.0 | 2.80e-01 | 100.0% | 21.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043620 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.94 | 83.0 | 4.67e-01 | 94.2% | 10.5% |
| 3744818 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.89 | 68.0 | 5.90e-01 | 80.8% | 56.0% |
| 3689259 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.87 | 79.0 | 4.76e-01 | 100.0% | 16.8% |
| 3502146 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.86 | 66.0 | 4.05e-01 | 82.7% | 27.2% |
| 3500138 | 564.1.1.0 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors | 0.85 | 62.0 | 5.88e-01 | 78.8% | 66.7% |
| 3427778 | 604.1.1.144 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26575 | 0.81 | 69.0 | 5.98e-01 | 96.2% | 61.3% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.80 | 59.0 | 4.78e-01 | 78.8% | 49.5% |
| 3484577 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.79 | 69.0 | 4.70e-01 | 100.0% | 66.8% |
| 5058780 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.78 | 65.0 | 5.11e-01 | 94.2% | 44.8% |
| 3659915 | 192.7.1.45 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp | 0.78 | 68.0 | 6.04e-01 | 100.0% | 68.0% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.76 | 62.0 | 5.69e-01 | 86.5% | 72.3% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.74 | 65.0 | 3.69e-01 | 94.2% | 10.6% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.74 | 63.0 | 4.01e-01 | 100.0% | 20.9% |
| 3977377 | 101.1.2.836 ↗ | alpha arrays › HTH › HTH › winged helix domain › Terminase_5 | 0.74 | 55.0 | 4.29e-01 | 82.7% | 39.0% |
| 3184585 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.74 | 63.0 | 5.72e-01 | 94.2% | 71.4% |
| 4030523 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.74 | 61.0 | 3.93e-01 | 94.2% | 21.4% |
| 4031187 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.74 | 60.0 | 5.32e-01 | 92.3% | 62.7% |
| 3744658 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.73 | 65.0 | 3.70e-01 | 98.1% | 44.3% |
| 3609697 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.73 | 63.0 | 4.65e-01 | 100.0% | 36.6% |
| 3790478 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.73 | 60.0 | 3.69e-01 | 94.2% | 15.9% |
| 4453591 | 3602.1.1.4 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › RRP36 | 0.73 | 60.0 | 4.33e-01 | 92.3% | 34.1% |
| 3594129 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.72 | 59.0 | 3.84e-01 | 94.2% | 21.4% |
| 4533832 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.72 | 64.0 | 4.72e-01 | 100.0% | 51.9% |
| 4034201 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.71 | 58.0 | 5.53e-01 | 94.2% | 76.7% |
| 3486407 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.71 | 57.0 | 4.66e-01 | 88.5% | 48.4% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.71 | 58.0 | 5.52e-01 | 94.2% | 76.7% |
| 3453715 | 603.1.1.118 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 | 0.70 | 62.0 | 5.07e-01 | 100.0% | 55.6% |
| 4058512 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.69 | 59.0 | 3.88e-01 | 100.0% | 43.6% |
| 4311810 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.68 | 60.0 | 5.27e-01 | 100.0% | 66.7% |
| 4982959 | 3922.1.1.357 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 | 0.67 | 58.0 | 4.64e-01 | 100.0% | 50.0% |
| 3230196 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 56.0 | 4.31e-01 | 94.2% | 41.7% |
| 5047712 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 55.0 | 4.88e-01 | 92.3% | 66.7% |
| 55264 | 604.14.1.1 ↗ | alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N | 0.65 | 52.0 | 5.50e-01 | 92.3% | 97.9% |
| 3267437 | 101.1.1.196 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK | 0.64 | 56.0 | 4.58e-01 | 94.2% | 86.7% |
| 4146694 | 192.29.1.277 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Dynamitin | 0.64 | 55.0 | 5.11e-01 | 100.0% | 75.4% |
| 3563618 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.63 | 56.0 | 4.37e-01 | 98.1% | 47.3% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 56.0 | 4.21e-01 | 98.1% | 43.3% |
| 3394753 | 192.5.1.12 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PH_19 | 0.62 | 55.0 | 4.96e-01 | 98.1% | 75.7% |
| 3934503 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.56 | 47.0 | 4.77e-01 | 92.3% | 100.0% |