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OQ992560.1__WNV49621.1__X__00078

Bact-Vir

OQ992560.1__WNV49621.1__X__00078

Identity

Accession:
OQ992560 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87_158-217
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02511.21 best Thy1 33.6 4.50e-08 56.9% 30.4%
PF02511.21 Thy1 29.6 7.80e-07 33.6% 24.6%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ah5B00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.87 82.0 7.12e-01 98.6% 99.5%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.84 79.0 6.95e-01 98.6% 94.1%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.82 79.0 6.64e-01 100.0% 95.1%
2cfaA01 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.80 74.0 7.50e-01 96.6% 97.9%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 62.0 6.55e-01 100.0% 96.2%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.78e-01 82.9% 93.0%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 30.0 3.98e-01 84.9% 97.1%
3e3xA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 4.39e-01 90.4% 100.0%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.56 30.0 3.90e-01 84.9% 98.6%
3im9A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 30.0 3.83e-01 85.6% 100.0%
1kn6A00 3.30.70.850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain 0.54 29.0 3.78e-01 84.9% 100.0%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 32.0 3.98e-01 89.7% 100.0%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 31.0 3.33e-01 89.7% 65.1%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 32.0 3.56e-01 90.4% 76.8%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 31.0 3.43e-01 92.5% 72.8%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 28.0 3.66e-01 71.2% 97.5%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.83e-01 86.3% 100.0%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 30.0 3.68e-01 81.5% 100.0%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 20.0 2.90e-01 87.7% 84.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4152367 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.94 92.0 6.85e-01 100.0% 83.5%
5077404 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.94 91.0 7.38e-01 100.0% 89.0%
4133204 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.94 91.0 7.41e-01 100.0% 88.7%
4930760 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.93 90.0 7.17e-01 100.0% 79.6%
4246528 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.93 90.0 7.32e-01 100.0% 90.6%
4943595 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.92 89.0 7.48e-01 100.0% 90.7%
5001652 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.92 89.0 7.09e-01 100.0% 80.0%
4977743 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.92 86.0 7.81e-01 96.6% 95.1%
4102574 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 87.0 7.15e-01 100.0% 99.6%
4992830 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 87.0 7.32e-01 100.0% 88.0%
5029299 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.90 84.0 7.24e-01 96.6% 96.2%
4941740 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.89 86.0 5.71e-01 100.0% 43.7%
4345249 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.89 84.0 7.09e-01 98.6% 90.7%
134624 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.89 85.0 6.94e-01 100.0% 97.2%
4926808 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 84.0 7.10e-01 98.6% 94.5%
4300356 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 81.0 7.17e-01 95.9% 99.5%
4988219 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 84.0 6.77e-01 98.6% 96.0%
4982008 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.88 84.0 7.37e-01 99.3% 96.0%
5046119 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.87 82.0 7.14e-01 98.6% 97.6%
5066566 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.87 83.0 7.03e-01 99.3% 94.1%
5024487 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.87 82.0 7.08e-01 98.6% 99.0%
143031 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.87 83.0 7.16e-01 99.3% 99.5%
4628182 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.86 82.0 6.59e-01 98.6% 85.1%
5054515 842.1.1.0 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 0.86 81.0 7.06e-01 100.0% 95.7%
4933142 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 81.0 6.81e-01 100.0% 97.0%
5069296 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.85 81.0 6.54e-01 100.0% 78.0%
1007250 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.84 77.0 6.76e-01 95.9% 99.5%
4292511 842.1.1.1 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 0.82 78.0 5.20e-01 98.6% 37.9%
5018373 842.1.1.0 a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 0.80 76.0 6.58e-01 100.0% 98.6%
1079958 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.67 34.0 4.64e-01 78.1% 97.3%
5028016 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.64 32.0 4.43e-01 84.2% 98.6%
4985048 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.64 31.0 4.08e-01 84.2% 83.7%
5023057 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.62 32.0 4.32e-01 87.0% 97.3%
5027605 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 30.0 3.79e-01 93.2% 78.8%
4490518 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.60 31.0 4.06e-01 81.5% 98.6%
3468140 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 31.0 3.82e-01 83.6% 82.2%
4516880 304.8.1.74 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26539 0.57 32.0 4.17e-01 77.4% 100.0%
5074728 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.56 29.0 3.81e-01 90.4% 91.3%
3178012 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 34.0 3.89e-01 96.6% 85.7%
3740868 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 29.0 3.75e-01 76.7% 95.0%
3724442 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 27.0 3.75e-01 70.5% 100.0%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 30.0 3.59e-01 85.6% 83.2%
5009717 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 38.0 3.91e-01 97.9% 77.1%
4115001 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 34.0 3.55e-01 94.5% 73.1%
3249652 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 32.0 3.38e-01 93.8% 67.4%
3272247 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 32.0 3.27e-01 92.5% 62.1%
D2 medium residues 97-154
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxuX03 6.10.250.3080 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 44.0 4.32e-01 82.8% 56.5%
6qr4B02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.68 41.0 4.21e-01 84.5% 64.3%
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.67 62.0 4.06e-01 100.0% 65.5%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 61.0 4.05e-01 100.0% 32.9%
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 58.0 3.54e-01 100.0% 43.2%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.67 63.0 4.18e-01 100.0% 64.5%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 58.0 4.43e-01 96.6% 45.8%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.66 44.0 3.21e-01 70.7% 28.0%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 3.40e-01 96.6% 18.1%
3v9rB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 56.0 5.17e-01 100.0% 79.2%
4gx0B04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 42.0 3.28e-01 79.3% 96.9%
5lnxF01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 45.0 3.62e-01 100.0% 49.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479370 220.1.1.94 beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.73 63.0 4.50e-01 94.8% 90.6%
5051019 1075.1.1.67 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › 12TM_1 0.72 57.0 3.73e-01 84.5% 51.5%
4163847 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.71 57.0 3.48e-01 86.2% 22.1%
3787921 604.5.1.36 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › UPF0220 0.69 55.0 3.99e-01 86.2% 85.2%
3993747 109.4.1.152 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 0.69 62.0 4.27e-01 100.0% 40.5%
3186774 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.68 61.0 3.69e-01 100.0% 17.6%
4964055 5069.1.1.6 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA 0.65 55.0 4.24e-01 98.3% 80.7%
3296365 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.64 46.0 3.27e-01 75.9% 42.9%
3557955 109.4.1.152 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 0.64 59.0 3.59e-01 100.0% 23.6%
1731786 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.58 51.0 3.89e-01 100.0% 42.4%
D3 medium residues 232-304
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936793 2002.1.1.69 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase 0.58 47.0 2.81e-01 90.4% 56.7%
3238219 109.4.1.177 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.54 44.0 2.47e-01 93.2% 18.7%