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OQ993070.1__WJZ44392.1__VPy01_06__00006
Bact-VirOQ993070.1__WJZ44392.1__VPy01_06__00006
Identity
- Accession:
- OQ993070 ↗
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Taxonomy
TaxID: 3058828
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 184-256
D2
medium
residues 1-68_131-176
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 32.0 | 4.05e-01 | 95.6% | 78.9% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 36.0 | 3.29e-01 | 95.6% | 43.4% |
| 6oi7A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 46.0 | 3.85e-01 | 86.0% | 49.0% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 41.0 | 3.09e-01 | 71.9% | 70.8% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.58 | 40.0 | 3.81e-01 | 97.4% | 59.1% |
| 1ymgA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.58 | 41.0 | 3.21e-01 | 97.4% | 36.1% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 33.0 | 2.87e-01 | 96.5% | 36.6% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 33.0 | 3.24e-01 | 97.4% | 52.0% |
| 2lvfA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.53 | 33.0 | 3.35e-01 | 97.4% | 60.5% |
| 5ucdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 40.0 | 3.26e-01 | 81.6% | 87.9% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 42.0 | 3.44e-01 | 84.2% | 98.5% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 30.0 | 3.36e-01 | 94.7% | 74.4% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 39.0 | 3.71e-01 | 87.7% | 66.0% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 38.0 | 4.20e-01 | 80.7% | 100.0% |
| 3op0A01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.51 | 41.0 | 3.90e-01 | 85.1% | 99.3% |
| 1uzbA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 40.0 | 2.95e-01 | 85.1% | 70.2% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 40.0 | 3.10e-01 | 86.0% | 82.0% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.50 | 30.0 | 2.99e-01 | 80.7% | 54.7% |
| 2f2cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 36.0 | 3.73e-01 | 75.4% | 92.7% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 37.0 | 2.78e-01 | 77.2% | 93.3% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.50 | 45.0 | 4.25e-01 | 97.4% | 95.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3720558 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.72 | 37.0 | 4.18e-01 | 72.8% | 63.3% |
| 4304350 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 39.0 | 3.85e-01 | 72.8% | 50.8% |
| 4111212 | 622.4.1.30 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › ETR1_N | 0.68 | 35.0 | 3.80e-01 | 96.5% | 58.0% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.64 | 35.0 | 3.58e-01 | 97.4% | 53.9% |
| 5064698 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.63 | 34.0 | 3.81e-01 | 94.7% | 65.6% |
| 3728517 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.63 | 34.0 | 3.10e-01 | 98.2% | 38.7% |
| 3497236 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 49.0 | 3.68e-01 | 83.3% | 84.9% |
| 3269956 | 1076.1.1.2 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1 | 0.62 | 44.0 | 3.55e-01 | 95.6% | 37.8% |
| 4088719 | 3579.1.1.13 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › PhaG_MnhG_YufB | 0.61 | 33.0 | 3.31e-01 | 94.7% | 51.3% |
| 4960309 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.61 | 34.0 | 3.47e-01 | 95.6% | 55.5% |
| 3283364 | 191.1.1.44 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43 | 0.60 | 36.0 | 3.48e-01 | 91.2% | 51.5% |
| 2698911 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.58 | 40.0 | 3.65e-01 | 98.2% | 53.3% |
| 3306338 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.56 | 35.0 | 2.68e-01 | 86.8% | 26.8% |
| 4965736 | 3843.1.1.33 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Vut_1 | 0.56 | 42.0 | 4.42e-01 | 90.4% | 85.7% |
| 3505505 | 5069.1.3.82 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › 7tm_3 | 0.55 | 33.0 | 3.32e-01 | 98.2% | 56.7% |
| 3737830 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.55 | 48.0 | 3.53e-01 | 93.0% | 85.6% |
| 3581305 | 604.12.1.92 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Meckelin | 0.54 | 43.0 | 3.53e-01 | 88.6% | 46.8% |
| 3360903 | 3543.1.1.0 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel | 0.53 | 44.0 | 3.62e-01 | 89.5% | 76.7% |
| 3674670 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.53 | 40.0 | 3.21e-01 | 97.4% | 38.7% |
| 4040950 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.52 | 31.0 | 3.19e-01 | 87.7% | 59.3% |
| 4216505 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 40.0 | 3.04e-01 | 96.5% | 36.2% |
| 4961187 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.51 | 44.0 | 4.34e-01 | 94.7% | 93.6% |
| 3722075 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.51 | 40.0 | 3.06e-01 | 85.1% | 74.5% |
| 3742854 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.51 | 40.0 | 3.00e-01 | 86.0% | 71.4% |
D3
medium
residues 69-130
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.74 | 53.0 | 4.67e-01 | 75.8% | 56.2% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.58 | 47.0 | 3.68e-01 | 87.1% | 76.7% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 44.0 | 3.46e-01 | 90.3% | 80.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3168458 | 2003.4.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › THR4_C | 0.68 | 47.0 | 3.09e-01 | 72.6% | 21.1% |
| 3598925 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.61 | 45.0 | 3.55e-01 | 79.0% | 69.2% |
| 3957907 | 1106.1.1.0 ↗ | alpha arrays › RDS3 complex subunit 10 › RDS3 complex subunit 10 › RDS3 complex subunit 10 | 0.59 | 44.0 | 4.53e-01 | 82.3% | 96.7% |
| 3997780 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.55 | 38.0 | 3.37e-01 | 72.6% | 65.3% |
| 4972659 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.55 | 33.0 | 2.70e-01 | 72.6% | 28.3% |
| 4981837 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 43.0 | 2.68e-01 | 95.2% | 87.2% |