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OQ993070.1__WJZ44397.1__VPy01_11__00011

Bact-Vir

OQ993070.1__WJZ44397.1__VPy01_11__00011

Identity

Accession:
OQ993070 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mardecavirus› Vibrio_phage_VPy01

TaxID: 3058828

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-117
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.72 27.0 3.14e-01 82.5% 44.7%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.70 50.0 5.77e-01 94.7% 100.0%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 47.0 5.41e-01 88.6% 100.0%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 57.0 5.59e-01 99.1% 94.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 30.0 3.00e-01 87.7% 42.6%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 28.0 2.95e-01 82.5% 43.3%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 26.0 3.44e-01 81.6% 71.4%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.60 52.0 3.85e-01 93.9% 83.3%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 43.0 4.48e-01 100.0% 81.9%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 26.0 2.95e-01 82.5% 50.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 32.0 4.07e-01 71.1% 98.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 47.0 4.41e-01 89.5% 72.9%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.56 31.0 2.78e-01 85.1% 37.8%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 32.0 3.25e-01 91.2% 56.4%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 29.0 2.87e-01 86.8% 50.0%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 29.0 3.60e-01 72.8% 98.3%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 32.0 3.24e-01 80.7% 61.1%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.41e-01 74.6% 73.6%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 38.0 4.00e-01 77.2% 93.1%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.50 42.0 3.90e-01 93.9% 72.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.74 31.0 3.82e-01 83.3% 60.0%
3963078 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.71 51.0 5.71e-01 95.6% 100.0%
3217804 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.66 29.0 4.22e-01 87.7% 100.0%
3323289 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.66 31.0 3.85e-01 95.6% 70.0%
3928459 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 42.0 4.44e-01 88.6% 77.0%
1905936 283.1.1.2 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24,Peptidase_M24_C 0.61 54.0 3.95e-01 96.5% 82.3%
3516502 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 30.0 3.61e-01 87.7% 71.4%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 29.0 3.17e-01 76.3% 53.7%
3931129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.59 39.0 2.98e-01 89.5% 26.2%
5006186 223.1.1.54 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 0.59 47.0 3.71e-01 86.0% 76.7%
3232476 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 35.0 3.77e-01 83.3% 67.0%
3509197 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.58 34.0 3.83e-01 80.7% 76.5%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 31.0 3.43e-01 77.2% 68.9%
3500665 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 33.0 3.56e-01 78.9% 70.5%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 31.0 3.07e-01 74.6% 50.8%
3616990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 29.0 3.01e-01 89.5% 53.6%
3872766 298.1.1.12 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Biliv-reduc_cat 0.54 37.0 3.67e-01 90.4% 64.8%
3579994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.75e-01 96.5% 69.2%
3475901 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 32.0 3.52e-01 74.6% 74.4%
3741704 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.53 32.0 3.11e-01 96.5% 50.8%
3610425 316.1.1.23 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.53 42.0 3.46e-01 88.6% 77.2%
5064859 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 43.0 3.38e-01 91.2% 96.2%
3983642 220.1.1.73 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 0.51 31.0 3.47e-01 80.7% 76.7%
3239567 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 31.0 3.25e-01 85.1% 63.8%
3221278 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.98e-01 85.1% 63.9%
None — 0.50 32.0 3.28e-01 85.1% 64.3%