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OQ995426.1__WMI33019.1__SEA_SCHOTTB_8__00008

Bact-Vir

OQ995426.1__WMI33019.1__SEA_SCHOTTB_8__00008

Identity

Accession:
OQ995426 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Kroosvirus› Gordonia_Phage_SchottB

TaxID: 3065408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-48
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23963.2 best DUF7291 36.2 8.30e-09 100.0% 22.9%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.72 54.0 3.23e-01 86.1% 58.6%
3ww7A00 2.40.10.500 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 51.0 3.93e-01 77.8% 80.5%
3a2kA03 3.30.465.60 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.70 49.0 3.84e-01 100.0% 32.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.69 58.0 3.77e-01 100.0% 43.4%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.68 45.0 4.31e-01 72.2% 55.8%
4yf2A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 47.0 3.26e-01 100.0% 21.5%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.66 50.0 3.03e-01 100.0% 11.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 46.0 3.14e-01 72.2% 23.9%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.66 48.0 3.18e-01 80.6% 28.0%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 46.0 3.21e-01 100.0% 21.1%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 47.0 2.76e-01 80.6% 8.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.18e-01 77.8% 76.5%
6p8uA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 52.0 3.56e-01 100.0% 52.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 44.0 3.69e-01 72.2% 39.4%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.64 45.0 3.30e-01 80.6% 25.9%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.64 50.0 3.70e-01 100.0% 77.6%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.64 52.0 3.11e-01 100.0% 26.1%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 51.0 3.72e-01 100.0% 35.6%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 42.0 2.89e-01 75.0% 17.9%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.62 41.0 3.78e-01 75.0% 47.1%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.62 42.0 2.96e-01 75.0% 19.0%
3bg1B01 6.20.50.170 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 48.0 4.38e-01 88.9% 71.4%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.84e-01 77.8% 73.2%
3mcbB00 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.61 48.0 4.15e-01 88.9% 74.1%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 47.0 2.82e-01 100.0% 27.6%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 42.0 3.79e-01 75.0% 55.8%
1u5mA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 44.0 4.45e-01 100.0% 91.7%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 45.0 3.35e-01 97.2% 72.2%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.56 38.0 3.00e-01 77.8% 36.9%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 42.0 2.60e-01 100.0% 39.8%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 43.0 3.24e-01 94.4% 41.3%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 36.0 2.28e-01 72.2% 10.5%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 44.0 3.91e-01 94.4% 76.8%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.53 44.0 3.76e-01 97.2% 87.1%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.53 40.0 3.58e-01 100.0% 56.1%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 39.0 3.65e-01 100.0% 80.4%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 40.0 3.25e-01 100.0% 56.7%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 35.0 3.52e-01 75.0% 71.1%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 2.76e-01 77.8% 85.3%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 37.0 3.34e-01 80.6% 77.2%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 40.0 2.65e-01 100.0% 31.9%
1wk1A01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 37.0 2.87e-01 100.0% 62.5%
4tvcA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.50 36.0 2.52e-01 100.0% 18.6%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 34.0 2.62e-01 86.1% 86.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3303405 109.4.1.1531 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7812 0.76 52.0 2.90e-01 75.0% 5.6%
3255424 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.72 61.0 3.94e-01 97.2% 38.8%
5015046 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 49.0 3.73e-01 72.2% 32.9%
3715537 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.71 59.0 3.87e-01 100.0% 34.9%
4179590 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 48.0 3.35e-01 72.2% 23.3%
5068438 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 47.0 3.27e-01 72.2% 21.5%
4984946 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 47.0 3.37e-01 72.2% 24.3%
3739528 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.69 57.0 3.59e-01 97.2% 34.6%
4561895 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.69 57.0 3.58e-01 97.2% 34.8%
4393380 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.68 47.0 3.54e-01 100.0% 27.4%
4997744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 46.0 3.27e-01 72.2% 24.3%
3900771 330.9.1.0 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.67 45.0 3.88e-01 75.0% 40.0%
3710525 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 3.22e-01 100.0% 19.3%
4203230 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.67 54.0 3.47e-01 97.2% 39.5%
5024226 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.66 45.0 4.26e-01 72.2% 57.8%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.66 52.0 4.51e-01 100.0% 55.0%
4868007 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.66 52.0 3.25e-01 100.0% 99.6%
3713064 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.65 45.0 4.77e-01 72.2% 93.3%
4031789 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.65 44.0 3.82e-01 72.2% 46.7%
3907533 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 44.0 4.32e-01 72.2% 65.0%
1396826 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.64 44.0 3.67e-01 72.2% 38.8%
3933098 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 44.0 3.66e-01 72.2% 43.1%
4025576 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 51.0 3.15e-01 100.0% 69.0%
2157238 5.1.12.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › PQQ_2 0.62 42.0 2.87e-01 75.0% 17.6%
4027011 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 2.91e-01 100.0% 13.1%
3272557 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.62 42.0 2.76e-01 75.0% 15.0%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 42.0 2.67e-01 72.2% 14.0%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 41.0 3.22e-01 72.2% 28.9%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 41.0 2.87e-01 75.0% 20.0%
3373479 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 47.0 2.86e-01 100.0% 22.5%
3394463 2004.1.1.230 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like 0.57 50.0 3.17e-01 100.0% 31.1%
4007558 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.57 50.0 3.21e-01 100.0% 93.5%
3701625 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.56 38.0 3.66e-01 75.0% 57.8%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 40.0 3.61e-01 75.0% 52.7%
2352 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.56 38.0 3.95e-01 75.0% 81.8%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.56 45.0 3.89e-01 100.0% 55.4%
3512217 223.2.1.53 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7278 0.55 40.0 3.39e-01 94.4% 38.6%
3259112 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.55 37.0 3.78e-01 75.0% 74.3%
4251107 321.1.1.6 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.55 44.0 2.53e-01 100.0% 8.6%
5001238 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.09e-01 100.0% 32.7%
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.55 38.0 3.91e-01 77.8% 77.1%
3669277 207.1.1.143 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 0.54 41.0 2.35e-01 97.2% 11.3%
3212072 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.54 39.0 2.32e-01 80.6% 9.3%
4999716 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 3.72e-01 72.2% 74.3%
3200628 64.1.1.15 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_2 0.53 36.0 3.65e-01 75.0% 74.3%
4946598 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 40.0 2.47e-01 100.0% 14.6%
3790093 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 37.0 2.16e-01 91.7% 9.0%
4965933 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.53 36.0 2.37e-01 75.0% 25.3%
3789788 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.52 37.0 2.23e-01 91.7% 10.9%
3589621 109.2.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92 0.52 45.0 2.56e-01 100.0% 21.0%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.12e-01 88.9% 76.2%
3689020 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 42.0 2.56e-01 100.0% 29.8%
2983288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 2.87e-01 94.4% 29.2%
5078972 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 41.0 3.32e-01 100.0% 62.4%
2354 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.51 36.0 3.47e-01 75.0% 60.9%
3269344 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.50 37.0 2.46e-01 100.0% 29.1%