←Back to structures
OQ995438.1__WMI34505.1__SEA_DAMASCUS_68__00068
Bact-VirOQ995438.1__WMI34505.1__SEA_DAMASCUS_68__00068
Identity
- Accession:
- OQ995438 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-102_182-241
Domain cluster:
rep: IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016635__D1-193
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 61.2 | 1.60e-16 | 56.4% | 44.0% |
D2
medium
residues 115-179
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.94 | 86.0 | 5.67e-01 | 100.0% | 28.3% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.86 | 65.0 | 4.45e-01 | 100.0% | 25.6% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.77 | 41.0 | 3.17e-01 | 76.9% | 26.4% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 45.0 | 3.07e-01 | 76.9% | 75.0% |
| 1yw5A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 40.0 | 3.30e-01 | 100.0% | 41.2% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.58 | 48.0 | 3.55e-01 | 90.8% | 83.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982008 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.95 | 60.0 | 4.02e-01 | 100.0% | 21.0% |
| 1007250 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.95 | 65.0 | 4.37e-01 | 95.4% | 22.9% |
| 1716752 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.93 | 85.0 | 5.64e-01 | 100.0% | 27.9% |
| 5077404 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.91 | 60.0 | 3.86e-01 | 95.4% | 18.0% |
| 5066566 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.90 | 59.0 | 3.90e-01 | 100.0% | 20.0% |
| 5069296 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.88 | 55.0 | 3.52e-01 | 100.0% | 16.1% |
| 4933142 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.88 | 56.0 | 3.71e-01 | 100.0% | 18.7% |
| 4992830 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 62.0 | 4.08e-01 | 100.0% | 21.8% |
| 4933143 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.82 | 57.0 | 3.91e-01 | 100.0% | 23.2% |
| 4102574 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.80 | 66.0 | 4.36e-01 | 100.0% | 24.2% |
| 4014264 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 60.0 | 3.72e-01 | 81.5% | 36.9% |
| 3601274 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.78 | 61.0 | 4.13e-01 | 86.2% | 81.2% |
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.78 | 53.0 | 4.53e-01 | 70.8% | 84.0% |
| 3799597 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 53.0 | 4.78e-01 | 70.8% | 88.2% |
| 957543 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.75 | 53.0 | 3.51e-01 | 100.0% | 20.7% |
| 3742534 | 622.4.1.52 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › TMEM254 | 0.72 | 63.0 | 5.33e-01 | 92.3% | 67.0% |
| 3565062 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.72 | 61.0 | 4.71e-01 | 92.3% | 70.0% |
| 5024487 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.72 | 49.0 | 3.34e-01 | 95.4% | 21.9% |
| 4984580 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.67 | 51.0 | 3.49e-01 | 81.5% | 63.3% |
| 3286591 | 101.1.2.612 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 | 0.64 | 48.0 | 3.68e-01 | 80.0% | 65.8% |
| 3177406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.01e-01 | 90.8% | 81.9% |
| 4943595 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.59 | 55.0 | 3.66e-01 | 100.0% | 66.2% |
| 3250893 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 52.0 | 3.50e-01 | 100.0% | 69.1% |
| 3598683 | 109.20.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain | 0.55 | 48.0 | 3.27e-01 | 98.5% | 46.1% |
| None | — | 0.55 | 45.0 | 2.74e-01 | 96.9% | 52.6% |