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OQ999171.1__WJZ23407.1__VPy02_19__00019
Bact-VirOQ999171.1__WJZ23407.1__VPy02_19__00019
Identity
- Accession:
- OQ999171 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Maculvirus›
Vibrio_phage_VPy02
TaxID: 3058627
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-64
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xz2A00 | 1.20.960.50 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain | 0.87 | 63.0 | 5.43e-01 | 100.0% | 51.5% |
| 2vxgA01 | 6.10.140.270 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 66.0 | 6.51e-01 | 97.7% | 82.6% |
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.80 | 67.0 | 5.11e-01 | 97.7% | 42.1% |
| 1gaxA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.76 | 67.0 | 4.21e-01 | 100.0% | 41.0% |
| 3ziuA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.76 | 64.0 | 4.05e-01 | 97.7% | 31.9% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 63.0 | 4.17e-01 | 100.0% | 36.4% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 5.53e-01 | 93.2% | 72.9% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 62.0 | 5.92e-01 | 100.0% | 81.1% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 62.0 | 4.76e-01 | 100.0% | 76.7% |
| 1v8bA01 | 3.40.50.1480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Adenosylhomocysteinase-like | 0.67 | 57.0 | 3.43e-01 | 100.0% | 14.0% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 53.0 | 4.55e-01 | 90.9% | 78.4% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.66 | 56.0 | 4.77e-01 | 100.0% | 75.3% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 55.0 | 4.72e-01 | 100.0% | 68.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3544499 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.90 | 81.0 | 6.10e-01 | 100.0% | 44.0% |
| 3664496 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.82 | 70.0 | 4.44e-01 | 100.0% | 21.0% |
| 3661550 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.76 | 68.0 | 5.15e-01 | 100.0% | 44.0% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 60.0 | 5.90e-01 | 100.0% | 90.0% |