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OQ999171.1__WJZ23424.1__VPy02_36__00036

Bact-Vir

OQ999171.1__WJZ23424.1__VPy02_36__00036

Identity

Accession:
OQ999171 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 55-104
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 5.01e-01 98.0% 98.8%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 55.0 4.31e-01 92.0% 55.6%
5tx7A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 46.0 3.08e-01 86.0% 18.4%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.68 50.0 4.06e-01 82.0% 43.6%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 52.0 4.50e-01 90.0% 85.9%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 55.0 4.68e-01 98.0% 90.9%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.29e-01 98.0% 85.8%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.64 50.0 4.55e-01 90.0% 80.0%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.64 46.0 4.34e-01 82.0% 67.7%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.63 48.0 3.33e-01 88.0% 95.3%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 45.0 4.15e-01 82.0% 98.6%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.62 42.0 4.85e-01 70.0% 97.2%
8kcaB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 3.02e-01 72.0% 21.1%
1y74A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.61 42.0 4.12e-01 76.0% 71.9%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 47.0 3.58e-01 92.0% 84.4%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.59 48.0 3.88e-01 100.0% 73.9%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 42.0 3.77e-01 80.0% 64.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.59 48.0 4.32e-01 94.0% 68.0%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.21e-01 94.0% 93.0%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 49.0 4.06e-01 98.0% 78.5%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 41.0 4.20e-01 86.0% 94.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 40.0 3.60e-01 78.0% 52.7%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 42.0 3.27e-01 96.0% 83.4%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.54 44.0 3.04e-01 96.0% 48.7%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 43.0 3.50e-01 96.0% 81.7%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.53 39.0 4.12e-01 80.0% 100.0%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.52 43.0 3.64e-01 100.0% 76.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 62.0 5.67e-01 80.0% 61.5%
4990618 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.81 62.0 4.31e-01 82.0% 27.7%
3231578 207.1.1.425 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4, LRR_5, LRR_8 0.77 55.0 3.06e-01 76.0% 6.4%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 54.0 5.32e-01 76.0% 74.5%
3344762 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.77 65.0 4.44e-01 94.0% 29.4%
3491263 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 65.0 4.49e-01 98.0% 41.7%
3520476 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.75 51.0 3.48e-01 74.0% 20.2%
3379868 148.1.3.277 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LETM1_RBD 0.75 57.0 4.92e-01 84.0% 56.2%
3327013 109.4.1.775 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 60.0 4.21e-01 94.0% 30.9%
3541625 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 57.0 4.04e-01 88.0% 27.7%
3372057 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.73 60.0 3.85e-01 94.0% 22.5%
3661674 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 60.0 4.36e-01 94.0% 36.4%
3444757 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 55.0 5.40e-01 82.0% 100.0%
3354084 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.72 59.0 4.70e-01 94.0% 51.4%
3802549 109.4.1.1519 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.72 58.0 3.53e-01 94.0% 15.4%
4013389 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 61.0 3.57e-01 100.0% 18.4%
3185917 375.1.9.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Wbp11 0.72 55.0 4.68e-01 86.0% 54.1%
3305546 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 59.0 4.25e-01 94.0% 36.6%
3675551 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.71 58.0 4.04e-01 94.0% 30.6%
4428204 109.4.1.11 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka 0.71 61.0 4.04e-01 100.0% 46.0%
3778832 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.71 55.0 3.32e-01 90.0% 12.4%
4992004 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.70 52.0 4.34e-01 84.0% 47.4%
3366651 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 57.0 3.98e-01 94.0% 30.9%
3368892 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.69 55.0 3.68e-01 90.0% 22.6%
4272244 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.69 56.0 3.25e-01 92.0% 70.3%
3250375 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.69 51.0 4.54e-01 82.0% 58.7%
3378464 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.69 56.0 4.16e-01 94.0% 40.0%
3233740 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.68 56.0 4.54e-01 98.0% 84.8%
3328225 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.68 50.0 4.96e-01 80.0% 100.0%
3796175 192.15.1.99 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF31025 0.67 49.0 4.84e-01 82.0% 83.0%
3432915 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 54.0 3.68e-01 94.0% 26.5%
4162588 109.4.1.1276 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.66 53.0 3.63e-01 96.0% 34.1%
3312166 109.4.1.777 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 54.0 3.59e-01 96.0% 27.4%
3583169 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 45.0 3.99e-01 76.0% 58.7%
3681881 192.29.1.46 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1110 0.64 53.0 3.79e-01 98.0% 70.3%
5039500 323.1.1.1 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.64 45.0 2.75e-01 76.0% 12.4%
3248542 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.38e-01 100.0% 42.2%
3844040 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 46.0 4.31e-01 82.0% 67.7%
3254138 192.31.1.6 alpha bundles › Long alpha-hairpin › CP12 › CP12 › Ifi-6-16 0.62 45.0 3.79e-01 80.0% 46.7%
4989349 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.61 48.0 4.56e-01 86.0% 81.7%
3804193 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 49.0 3.32e-01 94.0% 26.0%
4887715 568.1.1.4 few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH 0.60 42.0 3.54e-01 76.0% 43.0%
3737309 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.60 47.0 4.40e-01 90.0% 76.9%
3616195 603.1.1.148 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Keratin_assoc 0.60 49.0 4.03e-01 98.0% 93.2%
4013155 376.1.1.100 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 0.60 42.0 3.34e-01 78.0% 36.5%
3717244 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.07e-01 88.0% 90.0%
4855097 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.56 42.0 4.14e-01 82.0% 76.4%
D2 medium residues 105-189
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 31.0 3.14e-01 85.9% 46.4%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.57 46.0 3.18e-01 90.6% 90.6%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 32.0 3.31e-01 95.3% 55.4%
1fs7A01 1.10.1130.10 Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A 0.56 45.0 3.04e-01 88.2% 53.3%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.55 29.0 3.15e-01 81.2% 58.3%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 36.0 2.90e-01 98.8% 37.0%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 42.0 2.84e-01 92.9% 56.0%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.50 38.0 3.33e-01 98.8% 54.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 43.0 3.34e-01 72.9% 66.7%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.61 42.0 3.27e-01 71.8% 68.9%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 43.0 3.41e-01 75.3% 71.9%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.31e-01 72.9% 70.3%
None 0.58 41.0 3.23e-01 72.9% 70.3%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 41.0 3.04e-01 72.9% 56.5%
3655529 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 43.0 3.11e-01 81.2% 41.5%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.58 37.0 3.73e-01 81.2% 64.7%
3677582 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 43.0 3.09e-01 81.2% 43.8%
3330279 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 43.0 3.14e-01 81.2% 45.7%
3258060 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.56 34.0 3.69e-01 84.7% 72.9%
3414363 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.56 45.0 3.00e-01 89.4% 75.1%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.55 44.0 4.00e-01 87.1% 82.6%
3211111 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 43.0 2.91e-01 89.4% 69.6%
3875765 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 43.0 2.97e-01 89.4% 64.8%
3389084 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 43.0 2.97e-01 89.4% 72.4%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.53 36.0 2.74e-01 70.6% 51.6%
3194847 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.53 36.0 2.18e-01 70.6% 20.2%
4012111 812.2.1.0 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain 0.53 29.0 3.26e-01 88.2% 69.8%
3479321 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 44.0 2.95e-01 98.8% 93.0%
3717300 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 38.0 2.43e-01 81.2% 59.8%
3224634 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 39.0 2.64e-01 85.9% 48.1%
4399128 7581.1.1.30 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.51 42.0 2.84e-01 96.5% 90.8%
3391149 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.50 39.0 2.66e-01 87.1% 69.9%
5077859 2002.1.1.12 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.50 38.0 2.72e-01 83.5% 52.6%