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OQ999172.1__WJZ23550.1__LIS04_122__00122

Bact-Vir

OQ999172.1__WJZ23550.1__LIS04_122__00122

Identity

Accession:
OQ999172 ↗
Kingdom:
phage

Quality

64.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-65
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.76 67.0 5.44e-01 100.0% 66.7%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.74 63.0 5.87e-01 100.0% 75.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.74 48.0 4.27e-01 100.0% 47.5%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.71 60.0 4.48e-01 96.5% 48.0%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.71 59.0 5.49e-01 100.0% 73.6%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.70 57.0 5.35e-01 100.0% 73.6%
4ckbA01 3.30.470.140 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.70 60.0 4.29e-01 100.0% 77.5%
2nyhA00 3.30.70.1240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains 0.70 60.0 4.84e-01 100.0% 81.9%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 58.0 4.99e-01 100.0% 59.6%
1y8qB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 51.0 3.47e-01 84.2% 62.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 56.0 4.15e-01 100.0% 94.6%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.66 53.0 4.28e-01 96.5% 44.3%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 54.0 4.64e-01 100.0% 91.9%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 54.0 3.78e-01 100.0% 89.2%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.64 52.0 3.79e-01 98.2% 96.7%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 4.05e-01 98.2% 86.1%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.63 53.0 3.60e-01 100.0% 65.7%
5fdyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.25e-01 100.0% 69.1%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 50.0 4.75e-01 100.0% 76.1%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 50.0 3.93e-01 96.5% 63.0%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.16e-01 100.0% 65.6%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 53.0 3.72e-01 100.0% 43.1%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.38e-01 100.0% 70.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 41.0 3.82e-01 89.5% 53.2%
3apoA06 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 41.0 3.38e-01 73.7% 80.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 49.0 4.28e-01 100.0% 95.7%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 48.0 3.74e-01 100.0% 97.2%
7skhB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 49.0 4.22e-01 100.0% 62.9%
4ofdB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.21e-01 100.0% 67.4%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 42.0 3.66e-01 100.0% 50.5%
1s9rA01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.56 45.0 2.93e-01 94.7% 26.0%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 48.0 3.67e-01 100.0% 58.4%
4ba8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.94e-01 100.0% 62.7%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.55 44.0 3.70e-01 98.2% 70.1%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.55 45.0 2.94e-01 100.0% 18.6%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.54 47.0 3.79e-01 100.0% 77.2%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.54 43.0 3.04e-01 94.7% 73.0%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 41.0 3.18e-01 87.7% 91.4%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 41.0 2.94e-01 89.5% 97.5%
3cebA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 47.0 4.15e-01 100.0% 88.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.28e-01 100.0% 53.3%
7t7zA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 44.0 3.37e-01 100.0% 48.0%
3d03A01 3.60.21.40 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › GpdQ, catalytic alpha/beta sandwich domain 0.52 38.0 3.04e-01 82.5% 71.0%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.25e-01 94.7% 52.1%
2kknA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 38.0 2.96e-01 91.2% 35.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3337910 302.2.1.1 a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small 0.77 68.0 5.66e-01 100.0% 81.0%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.75 66.0 6.58e-01 100.0% 96.7%
3611020 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 63.0 4.30e-01 100.0% 34.1%
5016589 3325.1.1.1 a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.72 62.0 5.01e-01 100.0% 87.8%
3225123 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 39.0 4.28e-01 100.0% 66.7%
5081312 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.71 60.0 4.13e-01 100.0% 71.8%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.70 59.0 5.61e-01 100.0% 81.2%
3729195 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.69 57.0 4.55e-01 100.0% 44.0%
3687025 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.69 57.0 4.52e-01 100.0% 44.0%
2770666 834.1.1.1 a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD 0.68 58.0 4.42e-01 100.0% 49.7%
3482147 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.68 58.0 4.44e-01 98.2% 43.6%
3338287 221.1.1.166 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.68 49.0 4.73e-01 91.2% 67.7%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.68 52.0 4.78e-01 84.2% 100.0%
3229807 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.68 59.0 5.28e-01 100.0% 70.0%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.67 55.0 5.32e-01 100.0% 82.8%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.66 56.0 5.46e-01 100.0% 93.8%
4024040 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.66 56.0 5.41e-01 100.0% 89.2%
4965616 304.24.1.39 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF790 0.65 56.0 4.43e-01 100.0% 69.6%
4995626 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 54.0 5.04e-01 100.0% 73.3%
4927165 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.65 47.0 4.84e-01 96.5% 85.5%
5011497 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 53.0 3.79e-01 100.0% 72.0%
2754677 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.64 55.0 4.71e-01 100.0% 58.8%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.64 54.0 5.01e-01 100.0% 76.0%
2098117 304.56.1.1 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 0.63 53.0 4.62e-01 100.0% 76.8%
1734768 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.63 45.0 4.58e-01 96.5% 81.0%
3611538 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 46.0 4.65e-01 100.0% 85.5%
3391411 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 39.0 4.49e-01 100.0% 92.5%
3583014 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 51.0 4.02e-01 94.7% 61.6%
3999209 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 50.0 3.93e-01 100.0% 43.3%
4397259 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 45.0 3.81e-01 100.0% 45.6%
3240188 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 49.0 4.00e-01 100.0% 47.3%
3691245 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.60 48.0 3.26e-01 94.7% 49.4%
3215959 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.60 50.0 3.95e-01 96.5% 58.4%
3321727 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 47.0 4.50e-01 100.0% 75.7%
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.59 47.0 4.33e-01 98.2% 96.5%
3597792 221.7.1.0 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.59 50.0 4.15e-01 100.0% 68.2%
3240033 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.59 44.0 2.90e-01 84.2% 65.6%
4014350 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 47.0 3.00e-01 94.7% 36.5%
4965032 375.1.1.343 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.59 39.0 4.02e-01 100.0% 72.7%
3936120 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.58 46.0 2.96e-01 94.7% 35.5%
5062944 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 4.26e-01 100.0% 93.2%
3592513 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 46.0 2.94e-01 94.7% 40.0%
5039254 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.63e-01 100.0% 85.7%
5075866 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 44.0 4.14e-01 94.7% 100.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.57 46.0 4.57e-01 100.0% 91.7%
4212763 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.56 48.0 4.26e-01 100.0% 78.8%
3953844 304.24.1.34 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF3145 0.56 46.0 3.61e-01 100.0% 60.7%
3607869 2008.1.1.146 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.56 45.0 2.93e-01 94.7% 44.6%
4322608 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.56 47.0 4.21e-01 100.0% 78.8%
3787619 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.55 48.0 3.88e-01 100.0% 68.7%
2472950 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 45.0 3.32e-01 100.0% 32.4%
3319149 224.1.1.3 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen 0.55 48.0 3.53e-01 100.0% 37.4%
3622516 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 44.0 3.76e-01 100.0% 95.4%
3213166 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 2.77e-01 94.7% 37.3%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.78e-01 100.0% 65.1%
4992167 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 44.0 2.58e-01 94.7% 14.2%
4939763 832.1.1.0 a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 0.53 37.0 3.03e-01 73.7% 94.5%
4932525 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 39.0 2.60e-01 86.0% 37.4%
4663207 109.4.1.37 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 0.51 43.0 2.69e-01 100.0% 92.8%
5080812 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.50 41.0 3.49e-01 100.0% 60.9%