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OQ999172.1__WJZ23591.1__LIS04_163__00163
Bact-VirOQ999172.1__WJZ23591.1__LIS04_163__00163
Identity
- Accession:
- OQ999172 ↗
- Kingdom:
- phage
Quality
78.0
mean pLDDT
Taxonomy
TaxID: 3058626
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 83-164
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01446.24 best | Rep_1 | 69.2 | 5.50e-19 | 98.8% | 30.8% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 51.0 | 5.03e-01 | 97.6% | 74.2% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.68 | 59.0 | 5.59e-01 | 97.6% | 81.0% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.68 | 59.0 | 5.41e-01 | 100.0% | 75.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.67 | 56.0 | 3.96e-01 | 100.0% | 31.0% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.67 | 50.0 | 3.95e-01 | 82.9% | 39.5% |
| 1f5aA01 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.65 | 58.0 | 5.29e-01 | 100.0% | 75.7% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 53.0 | 4.86e-01 | 93.9% | 68.2% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 51.0 | 4.80e-01 | 93.9% | 70.7% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 51.0 | 4.77e-01 | 93.9% | 69.3% |
| 1yq2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 37.0 | 3.56e-01 | 74.4% | 48.4% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.64 | 54.0 | 5.23e-01 | 100.0% | 83.3% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 50.0 | 4.69e-01 | 93.9% | 68.6% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 48.0 | 4.46e-01 | 89.0% | 65.1% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 49.0 | 4.55e-01 | 90.2% | 69.9% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 47.0 | 4.54e-01 | 100.0% | 73.2% |
| 2dhmA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.61 | 48.0 | 4.70e-01 | 95.1% | 81.1% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.61 | 52.0 | 5.03e-01 | 100.0% | 95.7% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 50.0 | 4.13e-01 | 97.6% | 85.0% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 44.0 | 4.17e-01 | 100.0% | 66.0% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 50.0 | 4.33e-01 | 100.0% | 61.4% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.41e-01 | 100.0% | 74.0% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.58 | 49.0 | 4.25e-01 | 100.0% | 69.2% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 49.0 | 4.64e-01 | 100.0% | 79.0% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 4.27e-01 | 97.6% | 76.4% |
| 4dgwC00 | 2.60.40.2690 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 42.0 | 3.57e-01 | 80.5% | 80.1% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.56 | 47.0 | 3.77e-01 | 100.0% | 87.7% |
| 2r4fA02 | 3.90.770.10 | Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 | 0.55 | 46.0 | 3.52e-01 | 95.1% | 65.5% |
| 7w3rB01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 47.0 | 3.22e-01 | 98.8% | 90.9% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 23.0 | 3.21e-01 | 81.7% | 82.1% |
| 2hv2A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 35.0 | 3.36e-01 | 74.4% | 56.8% |
| 3qt2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.41e-01 | 74.4% | 68.1% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.52 | 35.0 | 3.93e-01 | 98.8% | 100.0% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 3.85e-01 | 95.1% | 96.6% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 41.0 | 3.17e-01 | 91.5% | 97.5% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4081561 | 304.8.1.50 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Rep_1 | 0.92 | 88.0 | 6.24e-01 | 100.0% | 41.0% |
| 4319983 | 304.55.1.25 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_1 | 0.91 | 86.0 | 5.98e-01 | 100.0% | 36.2% |
| 167276 | 304.5.1.8 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3240 | 0.69 | 51.0 | 5.02e-01 | 97.6% | 73.3% |
| 4954522 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.67 | 56.0 | 5.41e-01 | 97.6% | 83.0% |
| 3822456 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 58.0 | 5.30e-01 | 98.8% | 74.5% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.64 | 50.0 | 5.07e-01 | 97.6% | 88.6% |
| 4032064 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.63 | 55.0 | 5.31e-01 | 100.0% | 89.5% |
| 4985406 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.62 | 52.0 | 5.29e-01 | 97.6% | 97.5% |
| 4145589 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.62 | 54.0 | 5.05e-01 | 100.0% | 80.0% |
| 3983684 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.62 | 51.0 | 4.96e-01 | 93.9% | 82.2% |
| 5045252 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.62 | 52.0 | 4.95e-01 | 97.6% | 81.0% |
| 4997715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 46.0 | 3.69e-01 | 97.6% | 38.8% |
| 4255094 | 304.28.1.35 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless | 0.61 | 51.0 | 4.66e-01 | 100.0% | 70.9% |
| 4029235 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.60 | 49.0 | 3.73e-01 | 87.8% | 47.4% |
| 4045155 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.60 | 47.0 | 4.39e-01 | 93.9% | 66.4% |
| 4567458 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.60 | 49.0 | 4.40e-01 | 91.5% | 64.3% |
| 3313182 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.60 | 44.0 | 4.64e-01 | 79.3% | 97.1% |
| 4043451 | 3826.1.1.22 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › UPF0236 | 0.59 | 49.0 | 3.75e-01 | 92.7% | 73.8% |
| 4972532 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.59 | 49.0 | 4.82e-01 | 96.3% | 90.0% |
| 4342449 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.58 | 47.0 | 4.23e-01 | 91.5% | 61.7% |
| 4982831 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 50.0 | 3.08e-01 | 96.3% | 16.3% |
| 4089814 | 327.13.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C | 0.55 | 47.0 | 3.93e-01 | 100.0% | 95.6% |
| 3726153 | 304.112.1.1 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 | 0.55 | 46.0 | 3.66e-01 | 100.0% | 69.7% |
| 5054032 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 40.0 | 2.63e-01 | 93.9% | 17.0% |
| 3932435 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.54 | 44.0 | 2.99e-01 | 90.2% | 64.8% |
| 3769484 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.54 | 28.0 | 2.91e-01 | 98.8% | 48.8% |
| 5078639 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.53 | 37.0 | 2.91e-01 | 73.2% | 34.7% |
| 5026457 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.53 | 38.0 | 2.93e-01 | 76.8% | 40.9% |
| 5050213 | 192.2.1.87 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D | 0.52 | 39.0 | 3.01e-01 | 79.3% | 40.0% |
| 3701882 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 42.0 | 4.12e-01 | 96.3% | 100.0% |
| 3744519 | 101.1.2.535 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25889 | 0.51 | 39.0 | 3.18e-01 | 81.7% | 61.3% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.51 | 36.0 | 2.78e-01 | 74.4% | 34.6% |
| 5041611 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.51 | 37.0 | 2.86e-01 | 76.8% | 44.1% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.51 | 35.0 | 2.79e-01 | 74.4% | 35.9% |
| 4405445 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 37.0 | 3.95e-01 | 96.3% | 94.3% |
| 4356113 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.50 | 37.0 | 2.94e-01 | 79.3% | 37.3% |
| 3205721 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 37.0 | 3.97e-01 | 96.3% | 94.3% |
| 4984373 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.50 | 36.0 | 2.80e-01 | 78.0% | 33.2% |
| 4949473 | 5086.1.1.230 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ATP-synt_D | 0.50 | 36.0 | 2.75e-01 | 78.0% | 40.7% |