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OR003938.1__WJZ47886.1__X__00048

Bact-Vir

OR003938.1__WJZ47886.1__X__00048

Identity

Accession:
OR003938 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_DSL-LC03

TaxID: 3058961

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-111
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.65 39.0 4.39e-01 99.0% 79.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.62 43.0 3.72e-01 72.8% 67.1%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 41.0 2.96e-01 72.8% 61.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.56 28.0 3.55e-01 85.4% 83.1%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.55 44.0 3.40e-01 88.3% 90.7%
7qoaA01 1.10.4160.10 Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease 0.55 42.0 2.84e-01 80.6% 75.4%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 38.0 3.29e-01 100.0% 48.8%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 40.0 4.14e-01 82.5% 91.6%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 44.0 3.39e-01 97.1% 66.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 35.0 3.77e-01 100.0% 83.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994175 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.71 35.0 3.22e-01 82.5% 36.9%
4948486 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.65 32.0 4.57e-01 78.6% 100.0%
3505666 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.63 40.0 4.34e-01 100.0% 77.6%
3739339 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.63 36.0 3.84e-01 100.0% 63.3%
5053309 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 47.0 4.24e-01 83.5% 66.9%
3386115 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.58 33.0 4.11e-01 81.6% 95.0%
3637185 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.58 41.0 3.18e-01 73.8% 66.5%
3210512 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.57 41.0 3.98e-01 100.0% 67.0%
4017734 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.57 41.0 4.00e-01 100.0% 67.8%
4947407 244.3.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.56 38.0 3.70e-01 70.9% 84.2%
3731231 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.55 40.0 3.92e-01 77.7% 97.4%
3422338 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 40.0 4.17e-01 99.0% 83.2%
3248518 243.1.1.12 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.52 34.0 3.28e-01 92.2% 56.9%
D2 high residues 143-226_344-459
PDB
Domain cluster: rep: BML_08042016_6_5m_scaffold_3_prodigal-single.1__X__X__00154__D5-45_65-83_193-306
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 38.0 5.09e-01 91.0% 99.0%
3p1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 24.0 3.22e-01 84.5% 62.5%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 39.0 4.62e-01 97.0% 98.5%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 28.0 3.19e-01 90.0% 61.6%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 24.0 3.13e-01 91.5% 69.1%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 21.0 3.16e-01 74.5% 81.9%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 23.0 3.17e-01 96.5% 78.6%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 25.0 2.92e-01 88.5% 59.9%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.52 27.0 3.57e-01 78.5% 91.4%
3ayhB01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.52 23.0 3.37e-01 77.0% 97.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995818 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 48.0 6.05e-01 91.0% 95.2%
3944239 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.80 43.0 5.91e-01 92.0% 100.0%
3966825 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.76 46.0 5.91e-01 86.5% 100.0%
3586277 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 32.0 4.17e-01 70.0% 82.6%
3580020 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 56.0 5.75e-01 98.0% 99.5%
5065185 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 25.0 3.65e-01 83.0% 86.7%
3499602 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 23.0 3.18e-01 75.0% 69.0%
5007084 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.57 28.0 3.64e-01 95.0% 83.8%
4547549 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.53 23.0 3.05e-01 81.0% 73.1%
3236583 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 28.0 3.35e-01 73.5% 76.9%
3378988 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.52 26.0 3.47e-01 98.0% 87.3%
3966543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 30.0 3.70e-01 83.0% 91.7%
4012832 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.51 24.0 3.48e-01 75.5% 98.9%
3778888 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 28.0 3.23e-01 70.0% 71.2%
D3 high residues 238-328
PDB