←Back to structures

OR003938.1__WJZ47948.1__X__00110

Bact-Vir

OR003938.1__WJZ47948.1__X__00110

Identity

Accession:
OR003938 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_DSL-LC03

TaxID: 3058961

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-120
PDB
Domain cluster: rep: NC_047714.1__YP_009778783.1__HOQ63_gp056__00056__D25-114
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bjiA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.73 46.0 3.85e-01 72.5% 40.3%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 54.0 4.58e-01 79.1% 63.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.67 49.0 4.84e-01 100.0% 73.7%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.66 42.0 3.58e-01 70.3% 42.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.64 58.0 4.92e-01 100.0% 91.9%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 45.0 4.43e-01 76.9% 75.0%
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 42.0 3.17e-01 71.4% 94.4%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 52.0 4.28e-01 100.0% 83.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.59 53.0 3.85e-01 100.0% 40.0%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.58 40.0 3.40e-01 72.5% 92.3%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.58 42.0 3.93e-01 94.5% 61.1%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.66e-01 98.9% 84.2%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 3.21e-01 83.5% 76.0%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.56 47.0 3.95e-01 92.3% 55.9%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 40.0 2.97e-01 76.9% 96.3%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.55 47.0 4.12e-01 95.6% 80.1%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.55 47.0 3.92e-01 95.6% 68.5%
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.55 45.0 4.15e-01 90.1% 71.7%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 41.0 2.96e-01 85.7% 88.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 4.41e-01 100.0% 80.9%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.53 47.0 4.30e-01 100.0% 86.8%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 38.0 3.65e-01 100.0% 65.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 48.0 4.46e-01 100.0% 79.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 46.0 3.86e-01 100.0% 59.0%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 36.0 3.02e-01 72.5% 68.3%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 46.0 3.68e-01 100.0% 81.4%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 3.00e-01 91.2% 91.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 43.0 3.36e-01 94.5% 94.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3726880 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.72 54.0 4.79e-01 78.0% 77.6%
3724576 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.72 54.0 4.90e-01 79.1% 75.8%
3925272 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.67 48.0 3.73e-01 94.5% 36.2%
3916473 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 44.0 4.27e-01 73.6% 93.0%
3874056 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 36.0 4.33e-01 92.3% 94.5%
3257844 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.60 51.0 4.03e-01 96.7% 90.0%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 37.0 3.95e-01 100.0% 71.2%
4324615 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.59 52.0 4.43e-01 100.0% 87.7%
185765 5084.5.1.13 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 0.59 53.0 3.85e-01 100.0% 40.0%
5046458 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 51.0 4.19e-01 100.0% 88.6%
3799335 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.58 50.0 4.00e-01 100.0% 87.9%
4026163 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.58 41.0 3.12e-01 73.6% 55.1%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.57 49.0 4.52e-01 98.9% 98.4%
5078664 4018.1.1.0 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.57 46.0 4.00e-01 94.5% 57.8%
5042979 241.1.1.30 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.56 48.0 4.12e-01 96.7% 81.3%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 4.53e-01 100.0% 78.4%
847 9.1.1.20 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3255 0.54 42.0 3.84e-01 85.7% 64.3%
1548152 331.1.1.2 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans 0.54 45.0 3.63e-01 91.2% 76.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.23e-01 100.0% 73.9%
135442 220.1.1.42 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › INPP5B_PH 0.52 46.0 3.90e-01 100.0% 60.9%
3865654 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 47.0 4.28e-01 100.0% 79.2%
3894532 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 41.0 3.22e-01 87.9% 87.2%
3935302 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 42.0 3.38e-01 87.9% 86.7%
3973504 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.50 42.0 3.10e-01 93.4% 66.4%